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EMAGE:10646

5730494N06Rik RIKEN cDNA 5730494N06 gene ( MGI:1917862)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646
"Pseudo-wholemount" of euxassay_003242. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003242_01 euxassay_003242_02 euxassay_003242_03 euxassay_003242_04
EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646
euxassay_003242_05 euxassay_003242_06 euxassay_003242_07 euxassay_003242_08 euxassay_003242_09
EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646
euxassay_003242_10 euxassay_003242_11 euxassay_003242_12 euxassay_003242_13 euxassay_003242_14
EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646 EMAGE:10646
euxassay_003242_15 euxassay_003242_16 euxassay_003242_17 euxassay_003242_18 euxassay_003242_19
EMAGE:10646 EMAGE:10646
euxassay_003242_20 euxassay_003242_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10646Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10646_wholemount_strong.wlz
10646_wholemount_moderate.wlz
10646_wholemount_weak.wlz
10646_wholemount_possible.wlz
10646_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10646_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4716
Entity Detected:5730494N06Rik, RIKEN cDNA 5730494N06 gene ( MGI:1917862)
Sequence:sense strand is shown

>T4716
GTTGAGCGAGCCGTGCGAGCGCGCCTAACGGAGAACGGGGAGCGCAGCGCGGGTAGGGGGCGGGCGCGCG
CTCCCGGAAGCCAGCCGCGAGACCTGGCCCTGCCACCGAGGCTGCTTCCCGGAGACAGTTAGTTCACGTT
GGCGGCGGCGGAGGGCGACGAGAGGTTGTCCACAGCGCCACGCTTAGACTAGCTGTGTTACTCTGTTATG
ATGCCGTCTCGTACCAACCTGGCAACTGGACTCCCCAGCAGTAAAGTCAAATATTCAAGGCTTGCCAGCA
CAGACGATGGCTACATTGACCTTCAGTTTAAAAAAAGCCCTCCTAAGATCCCTTATAAGGCCATTGCCCT
TGCTACCGTGCTGTTTTTGATTGGCACCTTTCTCATAATCATAGGCTCTCTCCTGCTGTCGGGCTACATC
AGCAAAGGGGGGGCAGACCGAGCCGTTCCTGTCCTCATCATAGGCATTTTGGTGTTCCTACCGGGATTTT
ACCATTTGCGCATCGCCTATTATGCATCCAAGGGCTACCGGGGTTACTCCTACGATGACATTCCAGACTT
TGATGACTAGCCTTCGCCTCAGCCTTGAGAAGAGTCGCACACAGTGCAACCACTTTAAGACATCAAGCAA
GAACTCTGGCTAAGGGCTGAAGAAGTCTACAATTTGCAGATGTTTAGCAAAACAATGGCCAGATTGTATG
AGTCCTTCTCCAAAACGCTCCTGCTTTATAATTAGCTAATTAGGACATGGTATGTTTTCATCTCCTGGCC
CTGGCTAAGCTTGACAAGTTTTTCCACATGAGTGTGCATCATGTAAGAGTTGTGAAGCTAACTGTCTGGG
AAGGCAGCCTGTTCTATAGCGGAAGGTGTTACCCTCCTTAGAGCTGAACCTTTCTTTTGTCTTCCATTGT
CTGCTTGGTTTTGTAGCATAATGGGAAATGTATTGTCTAGTTTCTTATTACTAAGTAATTTATTTTTAAA
ATTACCTATCTTATCTCTCACCCTCTCCTCTACCATTATATCCTAGTAAAATTAAAGTATCTGTCTTACC
TTCATATGCTCCTCCACCTTCATATCCCAGTAAAACCAAATATCTGTAGATCCATCTCTAATTGGCTTTT
TTTTACATTGACAGCAACCTGGAATTTTTAAACCATGAAGCTGGGTATCATGATCCCAGTACTTGGGAGG
CAGAGCCAGGTGGATCTCTATGAGTTCAAGGCCAGCCTGGTCTACATAGAGTTTTACGACAACTAGGGCT
ACCTAGTGAGACCCTGTCTCAAGAAAAGGGAAACTTCCTCTGGTTTCTCCATAGTTTGCCTACTACAAAA
CTCAGGTGAATCTGTCCTTTGTAGGTCAAGAGATTGTGTGAATCATACCTCAAGGACTAGACTTTGGCTG
TTTCTTCGTAAAACTGTAGATAAGTGTACTTAGAGTTTATAGCCCTACTGCTGGCTGGTACTATGATATC
ATTCTGCTAAAGATTACAAGACTTGGCCAAGATCCCTGAAAATGTATTAAGTCAAATCTGGTTCTCAGCT
TATAAAAAGTGACAATTTTTTCTAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5035633 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5035633 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10644 same embryo
 EMAGE:10645 same embryo
 EMAGE:10643 same embryo
 EMAGE:10647 same embryo
 EurExpress:euxassay_003242 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS