EMAGE mouse gene expression spatial database

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EMAGE:10724

Ciapin1 cytokine induced apoptosis inhibitor 1 ( MGI:1922083)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001269. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001269_01	euxassay_001269_02	euxassay_001269_03	euxassay_001269_04

euxassay_001269_05	euxassay_001269_06	euxassay_001269_07	euxassay_001269_08	euxassay_001269_09

euxassay_001269_10	euxassay_001269_11	euxassay_001269_12	euxassay_001269_13	euxassay_001269_14

euxassay_001269_15	euxassay_001269_16	euxassay_001269_17	euxassay_001269_18	euxassay_001269_19

euxassay_001269_20	euxassay_001269_21	euxassay_001269_22	euxassay_001269_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10724_wholemount_strong.wlz

10724_wholemount_moderate.wlz

10724_wholemount_weak.wlz

10724_wholemount_possible.wlz

10724_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10724_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

submandibular gland primordium

moderate

regional

moderate expression: see section 07 08 09 17 18 19 20

facial vii ganglion

moderate

regional

moderate expression: see section 04 05 06 07 19 20 21 22

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 07 08 19

trigeminal v ganglion

moderate

regional

moderate expression: see section 03 04 05 06 07 08 09 18 19 20 21 22 23

vagus x ganglion

moderate

regional

moderate expression: see section 18

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 06 07 08 18 19 20

cervico-thoracic ganglion

moderate

regional

moderate expression: see section 10 11 17

cervical ganglion

moderate

regional

moderate expression: see section 09 17

thoracic ganglion

moderate

regional

moderate expression: see section 12 13 14 15 16

lower jaw incisor

weak

regional

weak expression: see section 11 12 15 16 17

upper jaw incisor

weak

regional

weak expression: see section 11 12 13 15 16 17

liver lobe

weak

regional

weak expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

renal cortex

weak

regional

weak expression: see section 07 08 09 10 11 17 18 19 20 21

urethra of male

moderate

regional

moderate expression: see section 12 16

tail dorsal root ganglion

moderate

regional

moderate expression: see section 08 09 10 11 12 16 17 18

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4923
Entity Detected:	Ciapin1, cytokine induced apoptosis inhibitor 1 ( MGI:1922083)
Sequence:	sense strand is shown >T4923 GCGGAGCGGGTTTTCAGGCTACGAGGAAGTACCATTTAGGTCCAGCAGCGCGGCAGGAATGGAGGAGTTT GGGATCTCCCCTGGCCAGCTTGTGGCAGTGTTCTGGGACAAGTCATCTCCTGAGGAAGCCCTAAAAAAGC TGGTGGCTAGACTGCAAGAGTTAACTGGCAGCGAGGGCCAGGTATTCATGGAAAACGTCACCCAGCTGTT GCAGTCTTCGCATAAGGAATCCAGCTTCGATGTCATTCTGTCGGGTGTAGTCCCAGGAAGCACCTCTCTG CACAGTGCTGAGGTTCTGGCTGAGATGGCCCGGATCCTCCGGCCAGGGGGCTGTCTTTTTCTGAAAGAAC CAGTGGAGACAGCTGAAGTTAACAATGACAAAATGAAGACGGCCTCTAAGCTATGTTCAGCCCTGACTCT TTCTGGCCTCGTGGAAATAAAAGAGTTGCAGAGGGAGGCCTTAAGCCCTGAGGAGGTACAGTCCGTGCAG GAGCACCTGGGCTACCACAGTGACAGCCTGCGCTCAGTCCGTGTCACTGGCAAGAAGCCAAACTTTGAAG TGGGTTCTTCTAGCCAGCTAAAGCTTCCCAACAAGAAGTCTTCTTCAGTGAAGCCTGTTGTGGATCCTGC TGCTGCCAAGCTCTGGACCCTCTCAGCAAATGACATGGAGGATGACAGTGTGGATCTCATTGACTCAGAC GAGCTGCTTGATCCAGAGGATTTGAAGAGGCCTGACCCAGCCTCCCTGAAGGCTCCTTCATGTGGGGAAG GGAAAAAGAGGAAGGCCTGTAAGAACTGCACCTGTGGCCTCGCAGAGGAACTGGAGCGGGAGCAGTCCAA GGCGCAGAGCTCTCAGCCCAAGTCAGCCTGTGGAAATTGCTACCTGGGTGACGCTTTCCGCTGTGCCAAC TGCCCCTACCTCGGGATGCCAGCCTTCAAGCCTGGCGAGCAGGTGCTCCTGAGCAATAGCAATCTCCAGG ATGCCTAGGAGGGACCTCAAGCCCACACACCTCCTCCTCCAGCAACTCCTGTCCTCAGCTCCTCCCACGG CCTCCTCCCACCTCTGGTTTCAGGCGCTCTGAAAACACTCACAGGGAGAGGCTTGCAGCCGAGCGAGCGA GCGAAGCTGCTGTGGGCAGTGGGGTGGGGTGCTGCTGTGTCTTGAAAGACCAAGGATTGAGGGGACCTGT CTCTTAGTGTTAGGGGAAGAGGGTGGATGCGCCTAAGGAACTCTGCTCCTGGTGTTACAGTGCTGTCCCT CTCTACCCTTGAGTATTTATGCTGAGTAAGCTCCAGGCTCCGCTCAGTGATGCTGCCACCTGCTGGACTT CCTCAGGATGTAGTTCTTGGAGCCATGGGTTAGCTGTCAAAGGGCCTCAGGGGCACCAAAGAAGTCACTC CCCCAGTTGTGATCCATCTTGTGTCCCTCTGCCTTTCTCACCTCACCCCGTTTTACTGTAGTGTTGTATC TGTGTCCTGTTGTCATTTCTGTTAAATGGTATTAAACTTTTGTGTTTTTATGTCTCCCTTTAAAAAAAAA AAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5123958 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5123958 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10725 same embryo
	EMAGE:10723 same embryo
	EMAGE:10721 same embryo
	EMAGE:10722 same embryo
	EurExpress:euxassay_001269 same experiment
	MGI:4823874 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source