EMAGE mouse gene expression spatial database

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EMAGE:10900

Gmppa GDP-mannose pyrophosphorylase A ( MGI:1916330)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003339. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003339_01	euxassay_003339_02	euxassay_003339_03	euxassay_003339_04

euxassay_003339_05	euxassay_003339_06	euxassay_003339_07	euxassay_003339_08	euxassay_003339_09

euxassay_003339_10	euxassay_003339_11	euxassay_003339_12	euxassay_003339_13	euxassay_003339_14

euxassay_003339_15	euxassay_003339_16	euxassay_003339_17	euxassay_003339_18	euxassay_003339_19

euxassay_003339_20	euxassay_003339_21	euxassay_003339_22	euxassay_003339_23	euxassay_003339_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10900_wholemount_strong.wlz

10900_wholemount_moderate.wlz

10900_wholemount_weak.wlz

10900_wholemount_possible.wlz

10900_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10900_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6192
Entity Detected:	Gmppa, GDP-mannose pyrophosphorylase A ( MGI:1916330)
Sequence:	sense strand is shown >T6192 GGCAGAGCTGGCGTAAAGGGAGCTAGTGGTTTAGGTAACAGCGCTCATCATGCTCAAAGCTGTGATTCTC ATTGGAGGCCCCCAGAAGGGGACTCGCTTCAGGCCTTTGTCTTTTGAGGTGCCCAAACCTCTGTTTCCTG TGGCAGGCGTTCCCATGATCCAGCACCATATAGAAGCCTGTGCCCAGGTCCCAGGGATGCAGGAGATTCT TCTCATTGGCTTCTACCAGCCTGATGAGGCCCTCACCCAGTTCCTGGAAGCTGCCCAGCAGGAGTTTAAC CTTCCAGTCAGGTACCTGCAGGAGTTTGCCCCCCTCGGCACAGGGGGTGGCCTCTACCATTTTCGGGACC AGATCCTGGCTGGGGCACCTGAGGCCTTCTTCGTGCTCAATGCTGACGTCTGCTCTGACTTCCCCTTGAG CGCCATGTTGGAGGCTCACAGGCGCCAGCGCCACCCTTTCTTACTCCTTGGCACCACGGCTAACAGGACA CAATCCCTCAACTACGGCTGCATCGTTGAGAATCCACAGACTCATGAGGTTCTGCACTATGTGGAGAAAC CCAGCACCTTTATCAGTGACATCATCAACTGTGGCATCTACCTTTTCTCCCCAGAAGCCCTGAAGCCTCT CCGGGATGTTTTCCAGCGTAACCAACAGGATGGGCAACTGGAGGAGTCCCCAGGCTCGTGGCCTGGCGCA GGGACCATCCGACTAGAACAGGACGTGTTCTCAGCCCTGGCTGGGCAGGGCCAAATCTACGTGCACCTCA CCGATGGTATCTGGAGCCAGATCAAGTCTGCAGGCTCAGCCCTTTATGCCTCCCGCCTCTATCTGGGGCG ATACCAGATCACTCACCCAGAACGGCTAGCCAGACACACTCCAGGGGGCCCACGCATCAGAGGAAATGTT TACATCCATCCAACCGCTAAAGTGGCCCCATCAGCTGTGCTGGGCCCCAATGTCTCCATTGGGAAGGGGG TGACCATAGGCGAGGGTGTGCGTCTGCGAGAGAGCATTGTCCTCCATGGAGCCACTTTGCAGGAACACAC CTGCGTCCTTCACAGCATTGTGGGCTGGGGGAGCACTGTGGGGCGCTGGGCCCGTGTAGAGGGGACTCCC AATGACCCCAATCCGAATGACCCCCGAGCTCGCATGGACAGTGAGAGCCTCTTCAAAGATGGAAAGCTGC TTCCTGCCATCACTATCCTGGGCTGCCGTGTTCGGATCCCTGCCGAGGTGCTCATCTTGAACTCGATTGT TCTACCACATAAGGAGCTAAGTCGAAGCTTCACCAACCAAATCATCCTGTGAGGATGCTGCCAAAAGGCC CCCAGGACTCCCGCCCACACTCCTTTGGGCTGCTGCCTGCCTGGCTAGCTCTGTCCAGATAGGACCTGAG GAAGCCACCTTGTAGGGAGCCTTGTGTGTGGCCAGGGACACCTGGCTTCCCTCCCTACTGCCAAATAAAC CCCTATGAACCTTGAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3498021 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3498021 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10895 same embryo
	EMAGE:10898 same embryo
	EMAGE:10896 same embryo
	EMAGE:10897 same embryo
	EMAGE:10899 same embryo
	EurExpress:euxassay_003339 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source