EMAGE mouse gene expression spatial database

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EMAGE:11016

Gpn1 GPN-loop GTPase 1 ( MGI:1921504)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003421. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003421_01	euxassay_003421_02	euxassay_003421_03	euxassay_003421_04

euxassay_003421_05	euxassay_003421_06	euxassay_003421_07	euxassay_003421_08	euxassay_003421_09

euxassay_003421_10	euxassay_003421_11	euxassay_003421_12	euxassay_003421_13	euxassay_003421_14

euxassay_003421_15	euxassay_003421_16	euxassay_003421_17	euxassay_003421_18	euxassay_003421_19

euxassay_003421_20	euxassay_003421_21	euxassay_003421_22	euxassay_003421_23	euxassay_003421_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11016_wholemount_strong.wlz

11016_wholemount_moderate.wlz

11016_wholemount_weak.wlz

11016_wholemount_possible.wlz

11016_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11016_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

sublingual gland primordium

strong

regional

strong expression: see section 18

submandibular gland primordium

strong

regional

strong expression: see section 07 08 09 10 17 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6824
Entity Detected:	Gpn1, GPN-loop GTPase 1 ( MGI:1921504)
Sequence:	sense strand is shown >T6824 GAAAGATGGCGGCGCCCGTGGCTCCATCCGAACCCCAGGCTTCCCGGGCTCCTCAGCCCCCCGTGTGTCT GTTGGTGTTGGGAATGGCGGGATCCGGGAAAACTACCTTTGTACAGAGGCTCACAGGACACCTGCACAAC AAAGGCTGTCCACCGTATGTAATCAACCTGGACCCAGCTGTGCATGAAGTCCCCTTTCCCGCCAATATTG ATATCCGAGACACAGTGAAATATAAAGAAGTCATGAAGCAATATGGACTTGGGCCAAACGGAGGTATAGT GACCTCACTCAACCTCTTTGCTACCAGATTTGATCAGGTGATGAAATTTATTGAGAAGGCCCAGAACACA TTCAGATATGTCTTGATTGACACACCTGGACAGATTGAAGTATTTACCTGGTCAGCTTCAGGGACAATCA TCACTGAGGCCCTGGCTTCCTCATTTCCAACAGTAGTCATCTATGTCATGGATACATCACGGAGCACTAA CCCAGTGACCTTCATGTCCAATATGCTTTACGCATGCAGCATCTTGTACAAAACCAAGCTGCCTTTCATT GTGGTCATGAACAAAACCGACATCATTGACCACAGCTTTGCCGTGGAGTGGATGCAGGATTTTGAGGCTT TCCAGGATGCCTTGAACCAAGAGACTACCTACGTCAGTAACCTGACTCGTTCCATGAGCCTGGTGTTGGA TGAGTTCTACAGCTCACTCAGGGTGGTGGGTGTGTCTGCTGTGGTGGGCACCGGCTTCGATGAACTCTGT ACTCAGGTCACCAGTGCTGCAGAGGAGTACGAAAGGGAATATCGTCCTGAATACGAGCGTCTGAAGAAAT CACTGGCAAATGCCCAGAGTAATCAGCAGAAGGAGCAACTGGAGCGTCTTCGGAAGGATATGGGCTCCGT AGCCCTGGATCCAGAGGCCGGCAAAGGCAACGCATCTCCTGTGCTGGATCCTTCTGACTTGATCCTGACT CGAGGAACCTTGGATGAGGAGGATGAAGAAGCTGACAGTGACACGGATGACATTGACCACAGAGTTACAG AGGAAAGCCGTGAAGAGCCAGCATTTCAGAACTTCATGGAGGAGTCAATGGCACACTGGAAGAGGAACAA GTAGGCCCTCCCACCTGCTGTACAGCTCTGATGTGCTGAGTCTCCATGCAGAGGACATCCTTCCTGTGAA CCAGGGCTGCAGTCAAGAGCAGTTTTCTCCCAAATGGTGACTTCTCTGAGGGAAACTGGGCTTAGATGAA GTCTGGTTGAAGGCGGAGCTGGCAGGTGGATGCCCATTCTTGGGTAGCTCCTCCCGATATTTATGCAAGG ATGTATTCTCACCGCTCTGGAAGCTGAGAGATAGCTGCTGAGCCTATAACTTCAAGTATCATCGTTTGAA CTCAAGTATTTCTGCTGCTGATGGACAGAGAGGACGTCTGTCCCAGAGACGCTTTGGACCTTGACTAGCT GGGTCTGTGGGCACAGCAGGATGGAAAGGAGAGTGTGTGTGTACAGAGGGCAGCACAGTGCCCTGGGCAG CCAGGTCGGATGTGATCTGTGCTCACACGAGGTAGCCCATTTTCAAGAATACTGTTAGGATGGTGACTTG GATAAAGATTTTGACTTTAACTTTGTGGTAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3711417 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3711417 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11013 same embryo
	EMAGE:11017 same embryo
	EMAGE:11014 same embryo
	EMAGE:11015 same embryo
	EurExpress:euxassay_003421 same experiment
	MGI:4825166 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source