EMAGE mouse gene expression spatial database

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EMAGE:11178

H3f3b H3 histone, family 3B ( MGI:1101768)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003140. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003140_01	euxassay_003140_02	euxassay_003140_03	euxassay_003140_04

euxassay_003140_05	euxassay_003140_06	euxassay_003140_07	euxassay_003140_08	euxassay_003140_09

euxassay_003140_10	euxassay_003140_11	euxassay_003140_12	euxassay_003140_13	euxassay_003140_14

euxassay_003140_15	euxassay_003140_16	euxassay_003140_17	euxassay_003140_18	euxassay_003140_19

euxassay_003140_20	euxassay_003140_21	euxassay_003140_22	euxassay_003140_23	euxassay_003140_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11178_wholemount_strong.wlz

11178_wholemount_moderate.wlz

11178_wholemount_weak.wlz

11178_wholemount_possible.wlz

11178_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11178_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4206
Entity Detected:	H3f3b, H3 histone, family 3B ( MGI:1101768)
Sequence:	sense strand is shown >T4206 CCACGCGTCCGGGTTTGGTCGTTCGTTGGTGGAGTATCTGCCCGTTCTGCTCGCCGATTGCGGCTCTTGT TCGAGCGCTTCCAGCGTCGCCTCGGTCTCAGCAAGGGCCCCAGACTCGGCTTTGGGTGAAAAAAAATGGC CCGAACCAAGCAGACCGCTAGGAAGTCCACCGGTGGGAAAGCCCCCCGCAAACAGCTGGCCACCAAGGCG GCTCGGAAAAGCGCGCCCTCTACCGGCGGGGTGAAGAAGCCTCACCGCTACAGGCCAGGGACCGTGGCTC TGAGAGAGATCCGTCGTTACCAGAAATCGACTGAGCTGCTCATCCGGAAGCTGCCATTCCAGAGATTGGT GAGGGAGATCGCCCAGGATTTCAAAACCGACTTGAGGTTTCAAAGTGCAGCCATCGGTGCCCTTCAGGAG GCTAGCGAAGCATACCTGGTGGGGTTGTTTGAAGATACCAATCTGTGTGCCATCCACGCCAAGAGAGTCA CCATCATGCCCAAAGACATCCAGTTGGCTCGCCGGATACGGGGGGAGAGAGCTTAAGTTGAAGCGGTTTT TATGGCATTTTGTAGTAAATTCTGTAAAATACTTTGGTTTAATTTGTGACTTTTTTTGTAAGAAATTGTT TATAATATGTTGCATTTGTACTTAAGTCATTCCATCTTTCACTCAGGATGAATGGGAAGAGTGACTGACT GTTCACAGACCTCAGTGATGTGAGCACTGTGGCTCAGGAGTGACAAGTTGCTAATACGCAGAAGGGATGG GTGATACTTCTTGCTTTTCATGATGCATGTTTCTGTATGTTAATGACTTGTTGGGTAGCTATTAAGGTAC TAGAATTGATAAATGTGTACAGGGTCCTTTTGCAATAAAACTGGTTATGACTTGATCCAAGTGTTTAACC ATACATCACTGTGATAGAATGTGGGCTTTTTCAAAGGTTGAAGATACAAGTTTTAGCCACAGTGTAACAG TTTCCTTTAAAAAAAAAAAAGTAAACCTGGCAGCTATAGAATACACTATGTGCATTTATAATAGCTATTT TATATATTGTAGTGTTCAACATTTTTAAATTAAATGTTTTACATTCACAAGTGGTGGGGAGTCTTGTCAT TAAGGTGTGTGTAATTTAGTCCAGTTGGTATTTCCTGACTAGACTGCATTTGTTTTTAACAGTAGAAAAA TGCTATGCGTATTAAACCTTGCATAAGTCCTCATTCTACCACATGTTCACTAACCCCTGACCCTCTGGCT GGTAACACAACACTAACGGGGATTTTATTTATAAGGGCTCTAGAGTAAAATAACAAGCTATTCACACCAG CATCATCTATTACTAATCTAGTTAGTGCAGCTTTTCATTGTGTTTGGTCTTAGGCCTAGATTGAGTTCGG TTTCGTTTCTTTTTAATCTTTAAGGGGGAAAACTGTACAAGGTTTGTTTTTCCTTGTAGAGTTTATAAAC ATGGGAGTAAGAACACAGCTTCAACTTCTTGGACCTCTGCCAATGAAGATGGGTTAGGTTACACCTGGTT ACTATACTGGCAAAATCCCTTTTATAGAGATGGCCTTCAAGTGGTTTTTAAAAGTATCCTATTGAAGTTT TTAGGTCAATTATGTATGTTGACTAAATTTACAAATAAACTTGTTTATTCAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4500770 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4500770 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11176 same embryo
	EMAGE:11180 same embryo
	EMAGE:11179 same embryo
	EMAGE:11177 same embryo
	EurExpress:euxassay_003140 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source