EMAGE mouse gene expression spatial database

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EMAGE:11255

Cops7a COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) ( MGI:1349400)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006494. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006494_01	euxassay_006494_02	euxassay_006494_03	euxassay_006494_04

euxassay_006494_05	euxassay_006494_06	euxassay_006494_07	euxassay_006494_08	euxassay_006494_09

euxassay_006494_10	euxassay_006494_11	euxassay_006494_12	euxassay_006494_13	euxassay_006494_14

euxassay_006494_15	euxassay_006494_16	euxassay_006494_17	euxassay_006494_18	euxassay_006494_19

euxassay_006494_20	euxassay_006494_21	euxassay_006494_22	euxassay_006494_23	euxassay_006494_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11255_wholemount_strong.wlz

11255_wholemount_moderate.wlz

11255_wholemount_weak.wlz

11255_wholemount_possible.wlz

11255_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11255_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6584
Entity Detected:	Cops7a, COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana) ( MGI:1349400)
Sequence:	sense strand is shown >T6584 CCCACGCGTCCGCAGAGCCCCGCACCTCGGCGCAGCCATGAGTGCGGAGGTGAAGGTGACAGGGCAGAAC CAAGAGCAGTTTCTGCTCCTTGCCAAGTCGGCTAAGGGGGCGGCACTGGCCACACTCATCCACCAGGTGC TGGAGGCCCCTGGTGTCTACGTGTTTGGGGAACTGCTGGATATGCCTAATGTTAGAGAGCTGGCAGAAAG CGACTTTGCCTCCACCTTCCGGCTGCTCACAGTGTTTGCCTATGGGACCTATGCGGACTACTTAGCTGAA GCCAGGAATCTCCCCCCACTGACTGACGCACAGAAGAATAAGCTTCGACATCTGTCAGTTGTCACTCTGG CTGCCAAAGTCAAGTGTATCCCATATGCAGTGTTGCTGGAGGCCCTTGCCCTTCGAAACGTGCGCCAGCT GGAAGACCTTGTGATCGAGGCTGTGTATGCTGATGTCCTTCGTGGCTCTCTGGACCAGCGCAATCAGCGG CTAGAGGTTGATTACAGCATCGGGCGGGACATCCAGCGCCAGGACCTCAGTGCCATCGCCCAGACCCTGC AAGAGTGGTGCGTGGGCTGTGAGGTTGTGTTGTCGGGCATCGAAGAGCAGGTCAGCCGTGCCAACCAGCA CAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATCGAAAGTGAGGTTGCCAACCTTAAGAAAACCATTAAA GTTACGACAGCAGCTGCTGCTGCAGCCACCTCCCAGGATCCTGAGCAACACCTGACAGAGCTGAGAGAAC CAGCTTCTGGCACCAACCAGCGCCAGCCCAGCAAGAAAGCCTCCAAGGGCAAGGGACTCCGAGGGAGCGC CAAGATTTGGTCCAAGTCGAACTGAAAGGACTTGTTTCTTCCCTGGGAATGTGGGGTCCCAGCTGCCTAC CTGCCTACCCCTTAGGAGTCCTCAGAGCCTTCCTGTGCCCCTGGCCAGCTGATAATGCTAGTTCATTACT TTTCATCTCCTCCACCCCCAAGCATAAGCCACACCCTCTGTAGGGAGGAGGCCAGTGCAGGTCATGTTCT GTTGGTACCTCTTATGTGTTCCATGCTCTTCCCCAGCACGCTTGCTCTCATCGTTCTTCCGCACTGTGTC TGCCCATTACCCCTGTCATTGAGCAGGTTGGCAGTCCTATGGAGGGTGCTGGCTCTTAACCACCCACACC TACCCCTGCATGCCTAATCTGCAGTTCCTCCTCCTCCCCTTGCCTAGTGGGCTGCATCTGAAAAGCCATG GGGAAGGGGGTCTCCACCTTCATCCCAGCCTTAGAGTTCTGGAGCCAGTCTGCTACCCTGGGAGTCGCTG GACATTTTCCTCCCAGAACCCCATCACACTACAATTGTTTCTTTCCTCTCTCATCTCCTTGGGCCTGGGG ATACTGCTGCTTCAGTGACCCCAGAGCCTGAGAACAGCTATTTTTGAGATGTTAAGAAATGGTTCTTTGT TGCTCATCATCTTAGGAAGCCCAATGGAAATCCTGGAAGGATTTATATCTCCTCCTGTGGTTCTGGTGGG GAAGGAAATATAGATTGTATATTAAAAATAAAAAATATATATGAATAGGTCTATATATATTGACACATGA CACAGAAATAAATCTATGAGAAATCTATGTACAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3593979 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3593979 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11257 same embryo
	EMAGE:11253 same embryo
	EMAGE:11254 same embryo
	EMAGE:11256 same embryo
	EurExpress:euxassay_006494 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source