EMAGE mouse gene expression spatial database

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EMAGE:11297

Pcsk7 proprotein convertase subtilisin/kexin type 7 ( MGI:107421)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003627. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003627_01	euxassay_003627_02	euxassay_003627_03	euxassay_003627_04

euxassay_003627_05	euxassay_003627_06	euxassay_003627_07	euxassay_003627_08	euxassay_003627_09

euxassay_003627_10	euxassay_003627_11	euxassay_003627_12	euxassay_003627_13	euxassay_003627_14

euxassay_003627_15	euxassay_003627_16	euxassay_003627_17	euxassay_003627_18	euxassay_003627_19

euxassay_003627_20	euxassay_003627_21	euxassay_003627_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11297_wholemount_strong.wlz

11297_wholemount_moderate.wlz

11297_wholemount_weak.wlz

11297_wholemount_possible.wlz

11297_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11297_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6833
Entity Detected:	Pcsk7, proprotein convertase subtilisin/kexin type 7 ( MGI:107421)
Sequence:	sense strand is shown >T6833 CACTGCTCACAGTGAAGGTGACATCTCCCTCCATTTTCACAAGATGAGTGTGGTATGGTTACCCAGGCCA GGACCTAAACTTCACAGAGAGCCCAGCCTGCTGTTCTGATGCCGAAAGGGAGGCAGAAAGTCCCACACTT GGATGCCCACCTGGGCCTGCCCATCTGCCTCTGGCTGGAATTAGCCATCTTCTTTCTGGTTCCCCAGGTC ATGGGCCTATCAGAGGCAGGTGGGCTTGACATCTTGGGCACAGGGGGGCTGAGCTGGGCCGTACATCTGG ACAGCCTAGAAGGTGAGAGGAAGGAAGAGAGTCTGACGCAACAGGCCGATGCTGTGGCCCAGGCAGCAGG GCTTGTGAATGCTGGGCGCATTGGAGAACTCCAGGGGCACTACCTCTTTGTCCAGCCTACTGGGCATAGG CAAGCCATGGAGGTGGAGGCCATGCGGCAACAGGCAGAGGCTGTGTTAGCCAGGCATGAAGCTGTGCGCT GGCACTCGGAGCAAACGCTGCTGAAGAGGGCCAAGCGCAGTATCCACTTCAATGATCCCAAGTACCCTCA ACAGTGGCACCTGAATAATCGGCGGAGCCCAGGAAGAGACATCAATGTGACAGGTGTGTGGGAGCGAAAT GTAACTGGGCGTGGGGTGACAGTGGTGGTGGTGGATGACGGAGTGGAACACACCGTCCAGGACATCGCAC CCAACTACAGTCCAGAGGGAAGTTATGACCTCAACTCTAATGACCCAGATCCCATGCCCCACCCTGATGA GGAGAATGGTAACCACCATGGGACCCGGTGTGCAGGAGAAATTGCAGCTGTGCCCAACAACAGCTTCTGT GCAGTGGGTGTGGCCTACGGGAGCCGAATAGCAGGTATCCGGGTGCTGGATGGACCACTTACTGACAGTA TGGAGGCTGTGGCGTTCAACAAGCACTATCAGATCAATGACATCTACAGCTGCAGCTGGGGCCCAGATGA TGATGGGAAGACAGTGGATGGTCCTCATCAGCTCGGAAAGGCTGCCTTACAACATGGAGTGATGGCTGGT CGCCAAGGCTTTGGAAGTATCTTTGTGGTTGCCAGTGGTAATGGGGGCCAGCACAATGACAACTGCAACT ATGATGGCTATGCCAACTCCATCTACACTGTCACCATAGGAGCTGTGGATGAGGAGGGACGGATGCCTTT TTATGCAGAGGAGTGTGCCTCCATGCTGGCAGTCACCTTCAGTGGTGGAGACAAGATGCTGCGGAGCATT GTGACCACTGACTGGGACCTTCAGAAGGGCACTGGCTGCACTGAAGGCCACACAGGAACCTCAGCTGCAG CTCCTCTGGCAGCTGGAATGATAGCCCTCATGCTGCAGGTGCGGCCCTGCCTCACATGGCGGGATGTACA GCACATAATTGTCTTCACAGCCATCCAGTATGAAGATCATCATGCAGACTGGCTCACCAATGAGGCTGGC TTCAGCCACAGCCATCAGCATGGTTTCGGCCTGCTCAACGCTTGGAGACTTGTCAATGCAGCCAAGATCT GGACATCTGTCCCTTACTTAGCCTCCTATGTCAGCCCCATGCTGAAAGAAAATAAGGCTGTTCCGAGGTC CCCCCACTCTCTGGAGGTGCTATGGAATGTCAGCAGGACGGACCTGGAGATGTCGGGGCTGAAGACCTTG GAACATGTGGCAGTGACAGTCTCCATCACTCACCCACGACGTGGCAGCTTAGAACTGAAACTGTTTTGTC CCAGTGGCATGATGTCTTTGATCGGCGCGCCCCGCAGCATGGACTCGGATCCTAATGGCTTCAATGCTTG GACCTTTTCCACTGTGCGGTGCTGGGGGGAAAGAGCAAGAGGCGTCTACAGACTGGTTATCAGGGATGTA GGAGATGAGCCGCTCCAGATGGGCATCCTCCAGCAGTGGCAGCTGACCCTGTATGGCTCCATGTGGAGTC CAGTAGACATCAAGGACAGACAAAGTCTCTTAGAAAGTGCTATGAGTGGAAAATACCTGCATGATGGCTT CACCCTGCCTTGCCCACCTGGGCTGAAAATCCCTGAGGAGGATGGCTACACCATTACCCCTAACACACTC AAGACCCTTGTGCTGGTAGGCTGCTTCAGTGTCTTCTGGACTATTTACTACATGCTAGAAGTGTGCCTGA GCCAGAGGAACAAGGCTTCCACCCATGGCTGCAGGAAGGGATGCTGCCCCTGGGCCCCACGAAGGCAAAA CTCCAAGGATGCAGGGACAGCACTAGAATCAATGCCACTGTGCAGCAGCAAGGACCTGGATGGAGTGGAT TCAGAGCATGGGGACTGCACAACTGCATCTAGCTTCCTGGCCCCAGAGCTGGATTGTCCTCCACACCAAC CCCCAGACCTGCTGCAGGGGAAGAGCGGGCAGATTTGCTGACCCCAGAGCCCAGCTTCCCCCATGTACAA CAGGCACTTCCTAAACTCGGTTATGAGGCTTTCAATCGTGGAAGCTCAGGAGGGAATGGTCCTGATAGTG ACATCTGGGACCCCAGGCCTCTGAAGCATTTGCAGCCTCCTCAGGAGGGTGAGGGCCATCTTAATGCAGT GATAAGGGACTGGTGATCATGGCTTCTCTAGCTGAACTTGGCTGAGAACCTTTGACAAGGGATTGGCACC AAGACCAGGCAGCCCTTGATTTCCTCGCTCTCTGGAGCTAGTCAGTGTCCTAGACCACCAGGACCTCTAC TCATTCATGAGTTAGTTATGCAGCAAGTCCCTATATACCTAGAAATGCTCTTGTCAGAAGTGTCACTGCC AAGGGACCAGAGAGAGGCTGCTAAGAGCCTGGACATGCCTACCCTGAAAGCAGCTGCCTTCATTACCCTT TTCTGTGCGCCTGTTCTGAAGCCAACTTAAACCTGTCCACATCTTCACTACCATTCGCCCTTTCTGCTGA AGGAATGGTGACGTGTTCCCAGGAGAACTGGGAGGCACAGGATTCCCAGCACCCTTGCTGCCTCATTGGG GAAGTTGGCCAGCTGGACTTCAGAGAGCTAAGACACAGCATTTTCAAAGATAGCCTGGGAGCACTGTCTC TGACCACCTGTCTTCCTCTGCACCGTGCTCAGGGAAATGGCCTTCATTCCAGAGGCCAGCTGTCTGCCTG ACTTTTCCTCCGTTCTTGGCCTTCTCCCCTTCCCATCTTCTGAGCTAATTGTTAATATGAATTTTTTAAT GCTTAAGATTTGATTTTTACTTTTCAAAGCAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3962441 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3962441 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11298 same embryo
	EMAGE:11296 same embryo
	EMAGE:11300 same embryo
	EMAGE:11295 same embryo
	EMAGE:11299 same embryo
	EurExpress:euxassay_003627 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source