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EMAGE:11511

Cd40 CD40 antigen ( MGI:88336)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511
"Pseudo-wholemount" of euxassay_006675. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006675_01 euxassay_006675_02 euxassay_006675_03 euxassay_006675_04
EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511
euxassay_006675_05 euxassay_006675_06 euxassay_006675_07 euxassay_006675_08 euxassay_006675_09
EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511
euxassay_006675_10 euxassay_006675_11 euxassay_006675_12 euxassay_006675_13 euxassay_006675_14
EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511
euxassay_006675_15 euxassay_006675_16 euxassay_006675_17 euxassay_006675_18 euxassay_006675_19
EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511 EMAGE:11511
euxassay_006675_20 euxassay_006675_21 euxassay_006675_22 euxassay_006675_23 euxassay_006675_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11511Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11511_wholemount_strong.wlz
11511_wholemount_moderate.wlz
11511_wholemount_weak.wlz
11511_wholemount_possible.wlz
11511_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11511_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7121
Entity Detected:Cd40, CD40 antigen ( MGI:88336)
Sequence:sense strand is shown

>T7121
GTAATTTGGCTCTTCTGATCTCGCCCTGCGATGGTGTCTTTGCCTCGGCTGTGCGCGCTATGGGGCTGCT
TGTTGACAGCGGTCCATCTAGGGCAGTGTCTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTG
CTGTGATTTGTGCCAGCCGGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCAC
CCATGTGACTCAGGCGAATTCTCAGCCCAGTGGAACAGGGAGATCCGCTGTCACCAGCACAGACACTGTG
AACCCAATCAAGGGCTTCGGGTTAAGAAGGAGGGCACCGCAGAATCAGACACTGTCTGTGCCTGTAAGGA
AGGACAACACTGTACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGA
GTTATGGAGATGGCCACTGAGACCACTGATACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCCAATC
AGTCATCACTTTTCGAAAAGTGTTATCCCTGGACAAGCTGTGAGGATAAGAACTTGGAGGTCCTACAGAA
AGGAACGAGTCAGACTAATGTCATCTGTGGTTTAAAGTCCCGGATGCGAGCCCTGCTGGTCATTCCTGTC
GTGATGGGCATCCTCATCACCATTTTCGGGGTGTTTCTCTATATCAAAAAGGTGGTCAAGAAACCAAAGG
ATAATGAGATCCTACCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATGGAAGATTATCCCGGTCATAA
CACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGT
CGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCCTGGAAC
TGCTTTGGAGGCGATGGCTGCTTGCTGACCTTTGAAGTTTGAGATGAGCCAAGACAGAGCCCAGTGCAGC
TAACTCTCATGCCTGCCCCCTGTCATTTCTCAACTTGCTTTTTAAGGATGGAGGGAAAGCTCGGGCATCG
GGGGGTCCACAGTGATATCTACCAAGTGCAGCAGTGCAGGACCCAGAGTTGTCTTGCTGCGGCGTTCACT
GTAAGGAGTCGTGGATACAGGAGTCCGTGGCCCGCAGCTTGTGCTGCTAGAGGGCACCTGGTTGCCCATC
AGCAGGGTACTGGCTAAATAAATCTGTAATTATTTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4018221 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4018221 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11510 same embryo
 EMAGE:11507 same embryo
 EMAGE:11508 same embryo
 EMAGE:11509 same embryo
 EMAGE:11506 same embryo
 EurExpress:euxassay_006675 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS