EMAGE mouse gene expression spatial database

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EMAGE:11582

Mlph melanophilin ( MGI:2176380)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003626. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003626_01	euxassay_003626_02	euxassay_003626_03	euxassay_003626_04

euxassay_003626_05	euxassay_003626_06	euxassay_003626_07	euxassay_003626_08	euxassay_003626_09

euxassay_003626_10	euxassay_003626_11	euxassay_003626_12	euxassay_003626_13	euxassay_003626_14

euxassay_003626_15	euxassay_003626_16	euxassay_003626_17	euxassay_003626_18	euxassay_003626_19

euxassay_003626_20	euxassay_003626_21	euxassay_003626_22	euxassay_003626_23	euxassay_003626_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11582_wholemount_strong.wlz

11582_wholemount_moderate.wlz

11582_wholemount_weak.wlz

11582_wholemount_possible.wlz

11582_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11582_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6637
Entity Detected:	Mlph, melanophilin ( MGI:2176380)
Sequence:	sense strand is shown >T6637 CGCACACAGCTCTGTCTAGCTCAGTGCACCCTGACACTGGCCTCGCTCGGTGCCTGGGGTTTCTCTCTCA GGAGCTAAGAGAAAGGAGCAGAGGCCAGGACCCACCGAGCCAGAGCTACAGGCTGGGCATTCCCAGGAGA GAGGCTGGTGTGGCCTGGATGAGGCGCCGAGATGGGGAAAAGGTTGGACCTTTCCACGCTCACAGACGAG GAGGCTGAGCACGTGTGGGCAGTGGTTCAGCGGGACTTTGACCTCAGGAGGCGAGAGGAAGAAAGACTCC AGGGGCTGAAGGGCAAAATACAAAAGGAGAGCTCCAAGAGGGAGCTGCTGTCGGACACAGCCCATCTGAA TGAGACTCACTGTGCCCGCTGCCTGCAGCCCTACCGGCTGCTCCTGAACAGCAGACGACAGTGCCTAGAG TGCAGCCTCTTCGTCTGCAAAAGCTGCAGCCACGCCCACCCAGAAGAGCAGGGCTGGCTCTGCGACCCCT GCCACCTGGCCAGGGTCGTGAAGATTGGTTCTCTGGAGTGGTACTACCAGCACGTGAGGGCTCGCTTCAA GCGTTTCGGGAGTGCCAAAGTGATCCGGTCTCTCTGTGGGCGGCTGCAGGGTGGAGGTGGATCTGAGCCA AGCTTGGAAGAAGGAAATGGAGACAGTGAGCAGACTGATGAGGATGGAGACCTGGACACAGAGGCCAGAG ACCAGCCCCTCAACAGCAAAAAGAAAAAGCGCCTGCTCTCCTTCCGAGATGTGGACTTTGAGGAAGACTC AGACCACTTGGTGCAGCCTTGCAGCCAAACCTTGGGCCTGTCCTCAGTCCCTGAGTCTGCACACAGCCTG CAGTCCCTCTCAGGTGAGCCCTACTCTGAGGACACCACCTCTCTGGAGCCCGAGGGCCTAGAGGAGACTG GTGCAAGGGCTTTGGGATGTCGTCCCAGTCCTGAAGTGCAGCCATGTAGCCCTTTACCCTCTGGGGAGGA TGCTCACGCTGAACTGGACTCGCCTGCAGCATCCTGCAAGAGTGCCTTTGGGACCACAGCTATGCCTGGA ACAGACGATGTCAGGGGCAAACATCTGCCCTCACAGTACCTGGCTGATGTAGACACCTCTGATGAAGACA GTATCCAAGGTCCCAGGGCAGCCTCCCAGCATAGCAAGAGGAGGGCCCGGACTGTGCCTGAGACTCAGAT CTTGGAGTTGAACAAGCGAATGTCAGCTGTGGAGCACCTGCTAGTCCACCTGGAGAATACGGTTCTGCCA CCCTCAGCCCAGGAACCAACTGTGGAGACACACCCCAGTGCTGACACAGAGGAGGAGACACTCAGGAGGA GGCTGGAGGAGCTGACCAGCAACATCAGTGGTTCCAGCACCTCATCAGAAGATGAGACCAAGCCAGATGG CACCTTCCTTGGAGGGTCCCCAAAGGTGTGCACAGACACAGGGCACATGGAGACACAGGAAAGGAACCCT CGGAGCCCTGGGAACCCTGCTCGGCCTACAAAAAGCACAGATGAGGAGCTCTCTGAGATGGAGGATAGAG TGGCCATGACAGCCTCTGAAGTTCAGCAGGCTGAGAGTGAGATCTCAGACATCGAGTCCAGGATCGCAGC TCTGAGAGCCGCAGGACTCACAGTGAAGCCCTCGGGAAAACCTCGGAGAAAGTCAGGCATCCCGATCTTT CTTCCCCGCGTTACTGAGAAACTTGACAGGATCCCAAAGACTCCACCTGCAGACCCTGATGACCAAGCCA AGATGCCCAAGGCAACAACAGCTGTGCCCTCTCTCCTGAGGAGGAAGTATTCTCCCAGCAGCCAAGGCGT AGACAGTGGTTCTTTTGATCGGAAATCAGTGTACCGTGGCTCGCTGACACAAAGGAACCCTAACGGGAGG AGAGGGACAGCCAGACACATCTTCGCGAAACCCGTGATGGCCCAGCAGCCCTAAAGGGAGGCTCATGGCA CAGGACAGTACCACAAAGCACCCCACAGTTTCCTCCACATGACCGTCGCCTCCCCATGGGCTCTGTTCTT TGTGATGCTCACAGCTGCTTGTAGTCATCATTCCAGTGAGGAGTAAGAAGAATTTTATGTGTGTCTCTAC CTGTGAGACTGCAGAATCTCAATCCTCCAGCTGTCACCAGGTCACCAACCAGGCACCTGCCAGCCTCTGA CCTGGGAAATACAAACTCTGTGACTTCTCCTCAACTGATGTTCTCTGCCTACTGAAGGTCACTCAGAAGC CATCTCGCTGTGATTCTTTAACCCGATCCTCGACTTTGCTGGGCCACCCTCACAGCTGGGATGAAAAGAG CTGGTTCAGAGGAAGCCCTGAACATGTACACATCCATGACTATGCACGAGCATGAGAGAGAGAGAGAGAG AGAGAGAGGAGGAGGAAGAGATGCAGGAGGAGATGGTGCTGCTGGTGAAGGGTGAGGAGGAGGAGGGTGA GGAGAAGTATGAGGTGGTGAAACTCAAGATCCCTGTGGACAACAAGGAGGTTGCCAGCCAGATGCCAGCG CCATCGGCCGACCCGGCGCGCCCCCACGCGTGCCCGGACTGCGGCCGC
Notes:	The probe template was PCR amplified from IMAGE:3599815 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3599815 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11580 same embryo
	EMAGE:11579 same embryo
	EMAGE:11581 same embryo
	EMAGE:11578 same embryo
	EurExpress:euxassay_003626 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source