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EMAGE:11617

Ccdc104 coiled-coil domain containing 104 ( MGI:1913994)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617
"Pseudo-wholemount" of euxassay_006484. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006484_01 euxassay_006484_02 euxassay_006484_03 euxassay_006484_04
EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617
euxassay_006484_05 euxassay_006484_06 euxassay_006484_07 euxassay_006484_08 euxassay_006484_09
EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617
euxassay_006484_10 euxassay_006484_11 euxassay_006484_12 euxassay_006484_13 euxassay_006484_14
EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617
euxassay_006484_15 euxassay_006484_16 euxassay_006484_17 euxassay_006484_18 euxassay_006484_19
EMAGE:11617 EMAGE:11617 EMAGE:11617 EMAGE:11617
euxassay_006484_20 euxassay_006484_21 euxassay_006484_22 euxassay_006484_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11617Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11617_wholemount_strong.wlz
11617_wholemount_moderate.wlz
11617_wholemount_weak.wlz
11617_wholemount_possible.wlz
11617_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11617_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6604
Entity Detected:Ccdc104, coiled-coil domain containing 104 ( MGI:1913994)
Sequence:sense strand is shown

>T6604
CGGCGATTGCGGGGACCTTGCTGCCCGCATTCTCCGTCGCTTCCTGCGGCCGAAAGGCCAGACAGGGCTG
GGGGAATCCGGCCTAGGCGTCCGCGTCGCCGGGTGCGAGCGGGATGGCTGCGGAAGAAGAGGACGAAGTG
GAATGGGTGGTGGAGAGCATCGCTGGGTTCCTGCGGGGCCCGGATTGGTCTATCCCCATCTTGGACTTTG
TGGAGCAGAAATGCGAAGTTTTTGATGATGAAGAAGAAAGCAAATTAACCTACACAGAAATCCATCAAGA
ATACAAAGAGCTGGTTGAAAAGCTGTTAGAAAGTTACCTCAAAGAGATTGGAATTAATGAAGATCAGTTT
CAAGAAGCGTGCACGTCCCCTCTGGCGAAGACGCGCACATCACAGGCCATTTTGCAGCCTGTGTTGGCAG
CAGAAGATTTTACTATCTTTAAAGCAATGATGGTCCAGAAGAACATTGAAATGCAGCTTCAAGCCATCCG
AATAATCCAGGAGAGGAATGGTGTGTTACCTGACTGCTTAACTGATGGTGCAGATGTGGTCAGTGACCTT
GAACAGGAAGAGATGAAAATTCTAAGAGAGGTCCTCAGAAAATCAAAAGAAGAATATGACCAGGAGGAAG
AAAGGAAACGAAAAAAGCAGTCATCAGAGGCTAAAATGGAAGAACTGCCAGTATACACGAGTGAAGCTGA
AAAAATGAGTAATTCCCAAGGGGATGGTGAACACTTTGTACAGCCACCCTCAGAAGTTAAAGTGCATTTT
GCTAATCAGTCAGTACAATCCTTGGCAAGAAAGATGGAGTTGTTGCCTGAAACTTCCTCCCTCACACAAA
AAGGTTTGAAGATACCTGGCTTAGAGCATGCAAGCATGGAAGGACCAATAGCAAATTTGTCAGCACTTGG
AACAGAAGAGTTACGTCAACGAGAGCATTATCTCAAGCAGAAGAGAGATAAGCTGCTGTCCATGAGAAAG
GATACGAGGACAAAGCAGATCCAGAATACTGAGCAAAAAGGAAAGCCTACCAGGGAGGCAGAGGAAATGA
CAGAGAAGCCAGAAATGACAGCAGAGGAGAAACAAACATTACTAAAGAGGCGATTGCTTGCAGAGAAACT
TAAAGAAGAAGTTATTAATAAGTAATATGAAAAATTAGCAAAACAGAAGCCCAAATTTTCTTAAAAATAA
ATTATTTAATCCTTAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3595965 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3595965 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11614 same embryo
 EMAGE:11616 same embryo
 EMAGE:11613 same embryo
 EMAGE:11615 same embryo
 EMAGE:11612 same embryo
 EurExpress:euxassay_006484 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS