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EMAGE:11623

Glis1 GLIS family zinc finger 1 ( MGI:2386723)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11623
euxassay_006666_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11623Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11623_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11623_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8126
Entity Detected:Glis1, GLIS family zinc finger 1 ( MGI:2386723)
Sequence:sense strand is shown

>T8126
GTTTCTTCCTGCAGGGACCCCACCACCCCGGGGTCACCCCCCTGTCTGTGAGAAGCTGCTGCACTTCCCC
CACCCAAACAGGTCACCCAGACCTCAGGCTACGTTTGTGAACGGCAGCCTCCCAGCCGCTCAGCACATCA
AGCAAGAAGCCCTACCGGACTACCAGGCCATGGTCAGCGCCCACACACCCCTGCCCACCCACTGCCGAGC
CCCATCGTCCATGGGTCTGCCCTCAGACCTGGACTTTCCAGACCGAGGCCTCACCAACCCTGCACCTTCC
TGCTACCTTCTGGGCAATGAACCCATCTCAGACCTGGGTCCCCAACCCGAGGCCCACCTCCCCGAGGGCA
GCCTGAAACGCTGCTGCCTCCTGGGCCTGCCCCCCACCTCTTCAGCCTCCTCCTCACCCTGTGCCTCCTC
AGATATCAATCCTGTCATCCACTCCTCCCAGACAGCTCTAGTTAGCTGTGTAAATGGACTCCGAAGCCCA
CCTCTGCCGGGAGACCTGGGGGGCCCTCCCAAGCGGTCACGGCCCGGGCCTGCATCCAGTGACGGCCAGG
AGGGCAGCTTGCAGCTTGAAGCATGCCGGAAGTCAGGCTTCCTGAAGCAGGAGCCCATGGACGAGTTTTC
AGAGCTTTTTGCTCCACACCACCAGGGTTTGCCACCCCCTTACCCCTTGCCTCAGTTGCCAACTGGCCCC
GGCCTCGGAGGCCTAGGGCTGGGCCTGGCAGGTAGGATGGTTGCCGGTCGGCAGGCATGCCGCTGGGTGG
ACTGCTGCGCAGCCTACGGGCAGCAGGAGGAGCTGGAGCGGCACATCGAGAAGAGCCACATCGACCAGCG
CAAGGGCGAAGACTTCACCTGCTTCTGGGCCGGGTGTGTGCGGCGCTACAAGCCCTTCAATGCCCGCTAC
AAGCTGCTCATCCACATGAGGGTACACTCAGGCGAGAAGCCCAACAAGTGCATGTTCGAAGGCTGCAGTA
AAGCCTTTTCCCGTCTGGAGAACCTGAAGATCCATCTGCGGAGCCACACAGGCGAGAAACCATACCTGTG
CCAGCACCCAGGCTGCCAGAAGGCCTTCAGCAACTCCAGCGACCGTGCCAAGCACCAACGCACCCACCTC
GACACGAAGCCATATGCTTGTCAGATCCCTGGCTGCTCCAAGCGCTACACGGACCCCAGCTCCCTCCGCA
AGCACGTGAAGGCCCACTCAGCCAAAGAGCAGCAGGTGCGTAAGAAGCTGCACACAGGTGCCGACCCAGA
GGCTGATGTTCTGTCCGAGTGTCTGTCCCTGCAGCAGCTCCAAGCATCCACACTGTTGCCGGCCAGCAGA
GGGAAGGGCAGCCAAACCCTGAGCCAGGAGCTCCTCCCAGGTGTGTATCCTGGCTCCGTCACCCCACAAA
ACGGGCTTGCTTCAGGCATCCTGTCCCCCTCCCACGATGTCCCTTCCAGGCACCACCCACTGGAGGTCCC
CACTGGTTCCCACCACCACCTGTCCCCTCTGCCCACAGCTGAGAGCACCAGGGATGGCCTGGGGCCCAGT
CTCCTTTCACCCATGGCCAGCCCACTGAAGGGGCTTGGTCCCCCACCGCTACCACCAGCCTCCCAGAGTC
AGTCTCCAGGGGGACAGTCATTCTCTACAGTCCCCAGCAAGCCTACCTCCCCATCCTTCCAAAGCCCACC
ACCTCTGCCCAGCCCCCAAGGCTACCAAGGCAGTTTCCATTCCATCCAGAACTGCTTCCCCTACGCTGAC
TGCTACCGGGCCACTGAGCCAGCAGCCTCCAGGGATGGACTGGTGGGTGATGCCCACGGTTTCAACCCCT
TGCGACCCAGCACATACTCCAGCCTCAGCACACCTTTATCCGCACCAGGCTACGAGACCCTGGCAGAAAC
GCCGTGTCCCCCAGCGCTGCAGCCACAGCCAGCTGAAGACCTGGTACCTAGTGGTCCTGAGGACTGTGGC
TTCTTCCCCAATGGGGCCTTTGACCACTGTCTGAGTCACATCCCGTCCATCTACACTGACACCTGAAGGA
AGGGGCGCTGCTCTGCCTGCCTGCCTGGCTCCTGAGCTACTTCACCTACCTGCCATCTGCTGGTGCTTCC
CACACGGGGCAGCAAGGCCACACCACAGGGTACTTCCCTACCTGGAGGGCTGTCTGGTCCAGAGCTGCCT
GCCAGGAGCTATGGCCCTCTGACAGCCCCATGGCTGTGTCTTCCTCTCTCTCCATAAGGTTCTCAAATCA
CAGACCTCGTGTATATACAATGTACAGGACCTCTTTTCCGCCGCCCTGCAAGTTTTATATTTTTGGTTTT
ACAAGAAAAACATTAAAAACTGGAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30468539 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30468539 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11622 same embryo
 EMAGE:11624 same embryo
 EurExpress:euxassay_006666 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS