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EMAGE:11665

Trdmt1 tRNA aspartic acid methyltransferase 1 ( MGI:1274787)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665
"Pseudo-wholemount" of euxassay_006993. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006993_01 euxassay_006993_02 euxassay_006993_03 euxassay_006993_04
EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665
euxassay_006993_05 euxassay_006993_06 euxassay_006993_07 euxassay_006993_08 euxassay_006993_09
EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665
euxassay_006993_10 euxassay_006993_11 euxassay_006993_12 euxassay_006993_13 euxassay_006993_14
EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665 EMAGE:11665
euxassay_006993_15 euxassay_006993_16 euxassay_006993_17 euxassay_006993_18 euxassay_006993_19
EMAGE:11665 EMAGE:11665
euxassay_006993_20 euxassay_006993_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11665Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11665_wholemount_strong.wlz
11665_wholemount_moderate.wlz
11665_wholemount_weak.wlz
11665_wholemount_possible.wlz
11665_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11665_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9995
Entity Detected:Trdmt1, tRNA aspartic acid methyltransferase 1 ( MGI:1274787)
Sequence:sense strand is shown

>T9995
AGTTTCCAGGCCGCGGTCGCGGTTGCGAGAGGATGGAACCTCTGCGTGTCCTGGAGCTGTACAGTGGCAT
TGGTGGCATGCACCACGCGCTGCGAGAAAGTCATATCCCTGCACATGTGGTGGCTGCTATTGATGTGAAT
ACTGTTGCTAATGAAGTATACAAGCATAATTTTCCTCATACTCACTTACTGTCAAAGACAATTGAAGGTA
TTTCACTGGAAGACTTTGACAAGCTATCTTTCAATATGATTTTAATGAGCCCTCCATGCCAGCCATTCAC
AAGAATTGGCCTACAGGGGGATATGACCGATCCAAGGACAACTAGCTTCTTGTATATTCTAGATATTCTC
CCAAGATTACAAAAATTACCCAAGTATATTCTCTTAGAAAATGTCAAAGGTTTTGAAGTATCTTCTACAA
GAGGGCTGCTGATACAAACAATAGAAGCCTGTGGCTTTCAGTATCAAGAGTTTCTATTGTCTCCTTCTTC
TCTAGGCATTCCAAACTCGAGGCTCCGATATTTTCTCATTGCAAAGCTTCAGTCAGAGCCTTTCCCCTTC
CAGGCCCCTGGACAGATACTGATGGAGTTTCCTAAAATTGTAACTGTTGAGCCACAAAAATATGCAGTAG
TTGAAGAAAGTCAGCCAAGAGTGCAGAGAACTGGACCACGTATCTGTGCTGAGAGCAGCAGCACACAGAG
TTCTGGAAAAGATACCATTCTCTTTAAGCTTGAGACTGTAGAAGAAAGGGACAGGAAACATCAACAAGAC
AGTGACCTCTCTGTGCAGATGCTGAAAGACTTCCTTGAAGATGGCGACACAGATGAGTACCTTTTACCAC
CCAAGTTATTGCTGCGATACGCTCTCTTACTAGATATCGTGAAGCCCACGTCCAGAAGGTCCATGTGCTT
TACGAAAGGGTATGGGAGTTACATAGAGGGGACAGGCTCCGTGTTACAGGCTGCAGAGGATGCGCAGATT
GAGAATATCTACAAATCTCTTCCTGATTTGCCACCAGAAGAAAAGATAGCTAAATTGTCAATGCTTAAAC
TGCGATATTTCACACCGAAAGAAATTGCAAATCTCCAGGGATTTCCTCCAGAATTTGGGTTTCCTGAGAA
GACAACAGTGAAACAGCGTTACCGGCTGCTTGGCAATAGCCTCAACGTGCATGTGGTAGCAAAACTCCTC
ACAGTCCTGTGTGAAGGATTTGGAAATGCCTCTGAGAGCTGTCACAAGATGCCGCTAATTCTAGATAGTA
ATTCCAAGATTCTATCTTGAATGAATTCTTATAGAGTTCAGCTAAATTCTTTGAATAGCATTTTCCTGGG
TAATTCAGCAGGAACTTAAATGTGTACATCCAATTGTCCCTCACATTTATGTCACTGTATCATCCAATTG
TCCCTCACATTTATGTCACTGTATCATCCAATTGTCCCTCACATTTATGTCACTGTATCATCCAATTGTC
CCTTACATTTATGTCACTGTATCATCCAATTGTCCCTTACATTTATGCCACTGGATTTGATAACTTCACA
TTGCTGGTTTTGCTTTATGGACAAATATTTTTACAAAGCTTTTAAACTTGTGTATTAAATATCTTTTATA
TTATGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30504522 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30504522 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11666 same embryo
 EMAGE:11668 same embryo
 EMAGE:11669 same embryo
 EMAGE:11670 same embryo
 EMAGE:11667 same embryo
 EurExpress:euxassay_006993 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS