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EMAGE:11677

Gimap6 GTPase, IMAP family member 6 ( MGI:1918876)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677
"Pseudo-wholemount" of euxassay_006771. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006771_01 euxassay_006771_02 euxassay_006771_03 euxassay_006771_04
EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677
euxassay_006771_05 euxassay_006771_06 euxassay_006771_07 euxassay_006771_08 euxassay_006771_09
EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677
euxassay_006771_10 euxassay_006771_11 euxassay_006771_12 euxassay_006771_13 euxassay_006771_14
EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677
euxassay_006771_15 euxassay_006771_16 euxassay_006771_17 euxassay_006771_18 euxassay_006771_19
EMAGE:11677 EMAGE:11677 EMAGE:11677 EMAGE:11677
euxassay_006771_20 euxassay_006771_21 euxassay_006771_22 euxassay_006771_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11677Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11677_wholemount_strong.wlz
11677_wholemount_moderate.wlz
11677_wholemount_weak.wlz
11677_wholemount_possible.wlz
11677_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11677_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8209
Entity Detected:Gimap6, GTPase, IMAP family member 6 ( MGI:1918876)
Sequence:sense strand is shown

>T8209
TTCTTGAGCTCAGATCATATTTTGCCGACAAAATATGGATTGAAAGATGGATTGGCTTTACAGAAAAACA
CTCGGGTCCATCGGCTCATGTTCTATAGAAACTTTTCCCTGGCCATTCTATTCATTCTTTCAGAGAATCT
ACATTTCGACCCCACCAGGAAAGCCAGAAAATTCACCAGAGACCAGTGCTACTGAAGTCGGGGAACAGAG
ACCTTCTTGCCTGTCAGCCAGCCCAGTGGTGGAAGAGGAAGAGTGTGAGCACAGACCTGAGAAGAATCCC
ACAAGGCAGTGGCCCCTGGACTCTGGACAAGGATTGACAAAAGGTCTGAAGGAGAAAAAACTCACCCCAA
AGAGACTGCAGCTCCTTCTGGTGGGGAAAACAGGAAGTGGGAAAAGTGCAACAGGGAACAGCATCCTTGG
CAGGCAAGCCTTTGAATCCAAAATCAGCGCTCGACCAGTGACCACGACATTCCAGAAAGGGACTAGAGAG
TTTGAGGGGAAAGAACTTGAGGTGATCGACACCCCAGATATTTTTTCACCTCAGAACCAGCCTGAGGCAA
CAGCTAAGAAGATCTGTGACCTCTTGGCCTCACCAGGGCCCCATGCAGTGCTGCTGGTGATACAGGTAGG
CCGGTACACTGCCGAGGACCAGGCGGTAGCCAGGTGCCTCCAGGAGATCTTTGGAAACACGATCCTGGCT
TACACTATTCTGGTGTTCACCCGGAAGGAAGACCTGGCTGAGGGCTCCTTAGAAGAATATATTCAAGAGA
ACAACAATAAGAGCCTGGATGTTCTGGATGTTGCATGTGAGAGGCGCCACTGTGGCTTCAACAACAAGGC
ACAAGGGGATGAGCAGGAGGCCCAGTTGAAGAAACTTATGGAGGAAGTCGAATTGATCTTGTGGGAAAAT
GAGGGCCATTGTTACACCATGGAATTTCCAAATGTTCCCAGCAAGACACTGTAACCAAATAGCAAGGCCC
TGAGGAGGCAACCATTAAAGAGTCCTGGCTGAAAAGGCTGTCCCAGATTCAGATGGCCTCTGAGAAGCCC
TGTAGGTACTGAGGCAGAGGGCATCCATGTGAACCAAGCTGGCCATAAGCAGGAGTGTCTTAGTCAGTGT
TCTATTGCTGTGAAGAGACACCATGACTGTGGCAACTCTTATAAAAGAAAACATTTAATTGGGGCTTAGC
CCATTATCTGGGCTATTTAATAGATTGTGTTCTATAACCATGTTCTAACCATTGACTTACTTCTAAGCCC
TTGAGAGACTTTGCTGCAATGACATATGTACAGTGACTAATTCTGAACAGTATATGTCTTTCCTGGGGAG
GGGCAGGAGTAGTACCATCTTTTGTGAGCTAAGTAGAGTTGGATGTATAGGAACAGATTACCAAGCACAA
GCAAGTCTTGCAACAGAGCCAACAAGTCTTGCAACAGATAGGCAGGACACGGCAGAGATCCTGAGGAGTC
AAATATGAGAGAGTCAACCCAGAGCCATCCCCTGTGTGCTGTCTCCCCTGTGCTCCACCATAAGTCCCCA
ATAAAGCCTTCATGTCCCATTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:1196098 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1196098 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11679 same embryo
 EMAGE:11676 same embryo
 EMAGE:11678 same embryo
 EMAGE:11675 same embryo
 EurExpress:euxassay_006771 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS