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EMAGE:11706

March5 membrane-associated ring finger (C3HC4) 5 ( MGI:1915207)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706
"Pseudo-wholemount" of euxassay_006866. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006866_01 euxassay_006866_02 euxassay_006866_03 euxassay_006866_04
EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706
euxassay_006866_05 euxassay_006866_06 euxassay_006866_07 euxassay_006866_08 euxassay_006866_09
EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706
euxassay_006866_10 euxassay_006866_11 euxassay_006866_12 euxassay_006866_13 euxassay_006866_14
EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706 EMAGE:11706
euxassay_006866_15 euxassay_006866_16 euxassay_006866_17 euxassay_006866_18 euxassay_006866_19
EMAGE:11706 EMAGE:11706 EMAGE:11706
euxassay_006866_20 euxassay_006866_21 euxassay_006866_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11706Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11706_wholemount_strong.wlz
11706_wholemount_moderate.wlz
11706_wholemount_weak.wlz
11706_wholemount_possible.wlz
11706_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11706_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8137
Entity Detected:March5, membrane-associated ring finger (C3HC4) 5 ( MGI:1915207)
Sequence:sense strand is shown

>T8137
CCCTGAGCGGGGCTGCGGGCGAGGGCCGAGCTCGCCGGCTCCGCGGAAGATGCCGGACCAAGCCCTTCAA
CAGATGCTGGACAGAAGTTGCTGGGTGTGCTTTGCCACCGATGAAGATGATAGAACAGCTGAGTGGGTGA
GACCATGCAGGTGCAGAGGATCTACTAAGTGGGTTCACCAGGCTTGTCTCCAGCGCTGGGTAGATGAAAA
GCAAAGAGGAAACAGCACAGCCAGAGTGGCCTGTCCTCAGTGCAACGCCGAGTACTTAATAGTGTTTCCA
AAGCTGGGTCCAGTGGTTTATGCCTTGGATCTTGCAGATAGACTGATCTCAAAAGCTTGCCCTTTTGCTG
CAGCAGGAATAATGGTTGGATCTATCTATTGGACAGCCGTGACTTATGGAGCAGTGACAGTGATGCAGGT
TGTAGGCCATAAAGAAGGGCTGGATGTTATGGAGCGAGCTGACCCTTTATTTCTTTTGATTGGACTTCCT
ACTATTCCTGTCATGCTGATACTAGGCAAAATGATTCGCTGGGAGGACTATGTGCTTAGACTATGGCGCA
AATACTCAAATAAACTACAAATCTTGAACAGTATATTTCCAGGGATTGGTTGTCCTGTTCCTCGAATTCC
AGCTGAAGCTAACCCTTTAGCAGACCACGTCTCTGCTACCAGAATTTTGTGTGGAGCCCTTGTCTTTCCT
ACTATTGCGACAATAGTTGGTAAACTGATGTTCAGTAGTGTTAACTCAAATTTACAAAGGACAATCTTGG
GTGGAATTGCTTTTGTTGCCATAAAAGGAGCATTTAAGGTTTACTTCAAACAGCAGCAATATTTACGTCA
GGCACACCGCAAAATCCTAAATTATCCAGAGCAAGAAGAAGCATAAAACTGACTTCTGGTTGTTCTGAGG
CCTCTCATCCTGACGAGTCTGTTGTGTTCTGATTCCATCATTAATGCGCTAGTGGAGACTTGTGACGCTG
CTCCTATATTCTAAGAGATACAATAAAGCACGCAGGGCCGGGGCAAGCCGCCCAGTAATCACGGACCTAA
GGACACGCGTCAGCTCTGTCATTTGTATGTTCTACTTTTATGGCAGTCGGCTAAACCATTATTTTAGCAT
GGGAAACCTGAGTTTGTTCATATTTTTCCAGACAAGAATGTAAAGATAAAACTGTACAAACATTAAAAGT
GGACATGTTTTATTCTGACGCCTCTTTTGTATATACTCAGTTCAGTGTTTTCTTAGGAATAGCAACTCGA
TGAAGGAACTGTGAGGGCTTTTCTCATTGGTGTAATTGATTGTATGCTACAAAGGAGCCTCTGTTAACAG
GAGGAAGTGTAAACTAGTTCTGAATAAATAACAAACCCAGAAATGTATGTCAGCATTGAAGTGATTATCT
GAACAAAAGAGATTTTGTTTTCTTTTCCTAAACCCATGTGACATCTCAGATGTGAAGGGTCAGTTTCCAG
GGCTTCCAAAGCACTTTTTCACTATTAAACTTTATTTATGCAATGTTAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30049608 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30049608 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11705 same embryo
 EMAGE:11703 same embryo
 EMAGE:11707 same embryo
 EMAGE:11704 same embryo
 EMAGE:11708 same embryo
 EurExpress:euxassay_006866 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS