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EMAGE:11740

1200011I18Rik RIKEN cDNA 1200011I18 gene ( MGI:1914717)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740
"Pseudo-wholemount" of euxassay_007097. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007097_01 euxassay_007097_02 euxassay_007097_03 euxassay_007097_04
EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740
euxassay_007097_05 euxassay_007097_06 euxassay_007097_07 euxassay_007097_08 euxassay_007097_09
EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740
euxassay_007097_10 euxassay_007097_11 euxassay_007097_12 euxassay_007097_13 euxassay_007097_14
EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740
euxassay_007097_15 euxassay_007097_16 euxassay_007097_17 euxassay_007097_18 euxassay_007097_19
EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740 EMAGE:11740
euxassay_007097_20 euxassay_007097_21 euxassay_007097_22 euxassay_007097_23 euxassay_007097_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11740Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11740_wholemount_strong.wlz
11740_wholemount_moderate.wlz
11740_wholemount_weak.wlz
11740_wholemount_possible.wlz
11740_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11740_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4460
Entity Detected:1200011I18Rik, RIKEN cDNA 1200011I18 gene ( MGI:1914717)
Sequence:sense strand is shown

>T4460
CGTCCAGCCTGGGTTTAGCTAAACTGCGTGTGCAGGTTGGCTTGGGCTTTGAGCGACTGTGCGTCGCAGC
GAATGGCTAGGGACCTGATCGGGCCGGCACTGCCGCCAGGCTTCAAGGAGCACGCGACAGTTGAGGACGA
GGAACGGGACCCGAGCCCGGTTGCAGGGCCAGCTCTGCCCCCTAATTACAGAAGCTGCAGTTCAGACTCC
TCAGACAGCGACGAGGACAGTAGTTCTTTATCTGAAGAAGGCAATCAAGAGTCTGAAGAAGAGGACACTG
GTCCAAATGCAAAAAAGCAGAGGCGAAATCAAGATGATGATGACGATGATGATGGGTTTTTTGGACCAGC
CCTTCCTCCTGGGTTTAAGAAGCAGGATGACTCTCCTCCCAGGCCTATAATAGGTCCCGCATTGCCACCT
GGTTTCATTAAGTCTCCACAGAAAAATGACAAAGGCAGAGAGGATCCAGGGCAAGTGTCATCATTCTTCA
ACTCAGAGGAAGCAGAGAGCGGTGAAGATGAGGATATTGTTGGACCAATGCCTGCAAAAGGACCAGTTAA
CTATAGCGTCACGACAGAGTTTGAAAAAAGGGCCCAGAGGATGAAGGAAAAATTGACCAAAGGAGATGAT
GATTCATCTAAACCAATTACAAGAGAGTCCTGGATGACTGAGCTTCCACCAGAAATGAAAGAATTTGGTC
TGGGGCCAAGAACCTTTAAGAGAAGAGCAGATGACAAATCCGGAGACCGATCCGTCTGGACAGACACCCC
AGCTGACCGGGAGAGGAAAGCTAAGGAAATACAAGAAGCAAGGAAGTCATTCAGTAAGAAAGATGAAGAA
AACATATTGTCAGGAAGGGATAAGAGACTGGCCGAGCAAGTATCCTCATACAATGAATCAAAAAGATCAG
AATCCCTCATGGACATTCATCATAAGAAGTTAAAGAGTAAGGCTGCTGAAGATAAAAACAAGCACCAGGA
GAGAATACCATTTGACCGTGATAAAGATCTCAAGGTTAATCGGTTTGATGAGGCTCAGAAAAAAGCCCTA
ATAAAGAAATCCAGAGAACTAAACACCCGGTTTTCACATGGCAAAGGCAACATGTTTTTATAAGTAAGTG
TACTTCAGTGAGGTACACTTATACTGATCAGCCCGAACCCCTCAGAATATACCTTTGTCAATAGTAATTA
TGTGCACAAATACGTCTCCTTTTGTATAAAGTAGATTCAGGGTCTACATTTTTATAAATTGTGACTTTTG
AAAAGTTGGGGGAGGGGAGATAGTGGGAAAAAAAAGCTTTGTCTTCACAATAGCCCAACAGAACATTGCT
ACTAGAAAAGGGTTTCAATGAAGAGAAAGGGCTCTTCACAGAGTGTGGTGTGCAGCTTGAGGGGTCATGT
GGTCCATTAGGGGCATTTGTGTGTGTTTAATTGTTCACTTGCTTGTTGATTTTTGAGACGGGGTCTCACT
GTGTAACCTTGGCTGGCCCAGAACTCACTGTGTATACTACTAGCAAGCTGGCCTCAAACTCCCAGAGACC
CACCTGCCTCTGTCCCCAAGTGCTGGGATTAAAGGTGAGTGCCACCATACCGTTCTTTGAACAACATTAC
AGTTAGAAAAACATGCATTGCTCCAGAAGGCCTCTGTAAGTTGAGTGTCAGCTGGTACGCCTTAAATATC
CATAATCCCATGGGTCCATCTATGAGAGTCTGGGATGTTGGTTAAGGAATTGTGTGAGAGCTGAGGATGC
TTCTTAAGTTCCTCGTGATTTGTAGTATCATGAAATAGATATCGATATTCAGGTGTGATTTTAAAGGATA
ATATGAACTTTAAAATGTTTTTCAGCTTACTGCATTGTTACATAAGAGAGATTTCCCCGTGTGATGTTTG
TCTGGCCACCATAATTTGTTAGAGAATGATCTTTAAAAACATATAAATTTGCCATGGTCTGTATCCTTTA
AAGTACTATGGGGACAGACAATCTGTGTTCTTATATAGAATGGAATGATTTTGGGTGTTCTTGGCTTTTC
TTCATGTAATTATTTTAAGAGTCCATGCCCACAATACTACAGCCCCTAATTTTTTATGGTGTCTTACATG
TTTCCTTAGTTCTGGGTGAGACTGTATACTCTCTACCACAGTCTGGACATTTTTCTTCAAATATATTTAA
CCTGCCCTAGAATCATTGTGTCAGGCTGTCTTAGTTAGGGTTTTACCTCTGTGAACAGACACCATGACCG
AGGCAACTCTTGTGAGGACATTTAATTAGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTAGCATCAG
GGTGGGAGCATGGCAGCATCTAGACAGGCATGGTGCAGGAGGAGCAGAGAGTTCAACATCTTCATCTGAA
GGCTGCTAGCAGAATACTGTTAGGATGAGGGTCTTAAAACTCACACCCACAGTGACACACCTACTCCAAC
AGGCCACACCTTCTAATAGTGCCACTCTCTGGGCCAAGCACATACAAACCATCACACAGGCCCTTGCAAA
TCCATCAATTTTAAATTTCTTAGCTTGTCTTCCAAACTGAACCTAGTCTATACAGAGCATGGGGGTTTGT
CCTTCCTGCTGTTGTATTTATTTAGTTCCTGTCAGGTTAATTGTTTTTATTGGTTTTAAGGTAAAGAAGC
TGTTTGGATTATCTCAGGTTAAGGAAATATTGTGATTTTAACAGTAAATATTTGTAGGGGAGGCAATCTG
AAGGACATTATACTCACCTATTCTCATTCATGTGAAGTCTAGGATGCTGTCTTCATGGTCTCACCAAAGC
TGCCTGCATCTTGGAACGTCACATGTGATCATCTGATTCATATATGTATATAGCACTTTGTATCTGGTTT
ACTGGAATATTAATTCTGGATGGCTTTTAAAAATAACCAAATAATCACTGGAAATGGGGAATCTGTACTC
GCAACCACCCAGTGGGAGTATTATATGGTTTAGTGCTGTAAGCAATGCCTCTTGAGCTGTTAAACAGACA
CTCCTAATGAGGGAGAGAAAAGCTAAATGCGAATTCTGGGCATTTCTAGCAGGTTTTTTTGTTCTGCCGA
CTCTGTATTCTAGTTTTCACAAAGCATAGAGTTGTAATGGGAAAATGTTTTGATTCCCAATTCATGTGAA
CTTTATAAAAATTAGGCAAACTGTTCAAATTACAATATAAAGTATTTCTTAATAGTGGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4946215 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4946215 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11743 same embryo
 EMAGE:11742 same embryo
 EMAGE:11738 same embryo
 EMAGE:11741 same embryo
 EMAGE:11739 same embryo
 EurExpress:euxassay_007097 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS