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EMAGE:11794

Zmat2 zinc finger, matrin type 2 ( MGI:1913742)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11794
euxassay_007174_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11794Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11794_wholemount_weak.wlz
11794_wholemount_possible.wlz
11794_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11794_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7157
Entity Detected:Zmat2, zinc finger, matrin type 2 ( MGI:1913742)
Sequence:sense strand is shown

>T7157
CATTCACTTCGCTGTGAAGATGGCGTCTGGCAGCGGGACAAAAAACTTGGACTTTCGCCGAAAGTGGGAC
AAAGATGAATATGAGAAGCTCGCGGAGAAGAGACTCACAGAGGAGAGAGAGAAGAAGGATGGGAAACCAG
TGCAGCCTGTCAAGCGGGAGCTTCTGCGGCACAGGGATTACAAGGTGGACCTGGAGTCCAAGCTGGGGAA
GACGATTGTTATCACCAAGACGACCCCACAGTCTGAAATGGGGGGCTACTACTGCAATGTCTGTGACTGT
GTGGTGAAAGACTCCATTAACTTCCTGGACCACATTAATGGAAAGAAACATCAGCGAAACCTGGGTATGT
CCATGCGCGTGGAACGCTCCACTCTGGATCAGGTAAAGAAGCGTTTTGAGGTGAACAAGAAGAAGATGGA
AGAGAAGCAGAAAGATTATGATTTTGAGGAAAGGATGAAGGAGCTCAGAGAAGAGGAGGAAAAGGCTAAA
GCATACAAAAAAGAGAAACAGAAGGAGAAGAAAAGGAGAGCCGAGGAGGACTTGACTTTTGAGGAGGATG
ATGAAATGGCAGCTGTGATGGGTTTCTCTGGCTTTGGTTCCACCAAGAAGAGTTACTGAAGCGTTCTCTT
TGGCCTAACTTTGGCCTATACTGGACCTAATGAGTGTGTGTTGAGGTGGGGTGGGGGCGTCATTTCTTTT
TTGGGTACTGGAGAAGGTTCTTAAGAGTGTTAATGGGCAGGGCTCGAGGGTGGGTGTTTGTGGTTTCCCT
CTACGTTGGGGGAGGTACTGTGGTTTATTCCTTCAGCCTCAGTACATTACTGGAGTCACAGAACCTCTGC
CCATCTGTGTTCCCAATAAAGAAGGACCTCCCTCTTTGAGACTGCTTTCCCCATATCCCCCTGCATCTTT
CCCTCTTCATCTATCAAACCTGTTGTCTGAGCATCCTCCCTTTTCCTGTGTCCTGCTATTGTTTTAATTT
TTACTCTTGTTCAGCTTGCAACAGAAGGGTTCTGAGTCTCCAGTCTGCGGGTACTGGTATACCCTTGACC
CAGCTCTTCCTCCCATTCCACCCCGCGGTTCTCTACCCACTTGTGCATGCATGTGATTTCTGCCTGGGTC
AATGTGTGTGTGGGTATGTGTGCATGATATGTCACAAAGAGGGGACCTGAGCTAGAATCTCAGAGCATTG
ATGCCCTGAGACCTAATGTTCTTGGTTTCCTCAGTGCATGTAACAGGATATTAAATGGGATGAGTGTCTG
GTGAGTTTTTAACCTCGTTTCTTCTGTTTCACTTCACTGAGGATCTCTGGTTTTGTCTTCCTCGGGAACA
GGTTCTTGGAAGAACCTGTTTTATGCAAAAAAGCAACAAAACAGCCCTAAAACCAAACAAAGGCACTCAC
TCTGGGAGACCCCGGTTCTCAGACACTGTTCAACATGTGCAGTAAATGACAGTGACAAGGCCTGTTTCAC
ATTGTTTGGTTACAAGTCTGTATCATTCCCTGCCCCACATGTTCTTACATCAAGAATATCTATAGACCCT
TCCTCTTCCCACCCCCTTACATACAGGTTTCCTTAGTGCGAGTTTTCCCCTCTGCTAATAGGATCTGTGC
CCTTGGGAGTCCAAACAAAACATTTTAGTCCCCTGTAATTTTAGTACCCTCTGATCTTCCTAGAAGAGCT
CAGGGTTAAACTTGCCTGTCTGCAGTTGGGCGGGCACTGGGTTATTCAGGCTTGGCACTGTTGATGATAA
GCTAGGTAAGTTTTGGAATTGGGGTTTTTGTGACAGGGTCCCACTTGACTGGTCTTGAACTCAGATATCT
GCCTGCCTCAGCTTCTCCAGTGCTGAGATTAAATGTGTGTGCCTCCATTTCAGGCCAGGTCTTTTTTTTT
TTTTAAGGGGCTCTATAGTATGTTGAGCAGCGTCGTCACCTAGTAGATGTCAGCAGTAGCAGTCCCATCC
AGTTTGTGACAGCTACAAATATCTTTGTCCCCTGGGAGTAGGTAAATGGCTCTCCCATTGAAAATGACTA
AAACTCTTATCCACTGTAGTGTAACTTGTGAACTCTATGACAGAGATTAGTTAAAAACAAATCCCTCCCA
AACATTGAGAGCTAGATCACGTACTGTGCCTTGTCTAAGGAATTCAAGGGCGAGATGGGGATGAGGGCAC
AGGTGACAGTTATACAAGTCTTGTAAACAGATGAAGCTCCCTTTGCTGGCTCTACACTCTCTCAATAAAG
GGGTCCACTCGACAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4022326 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4022326 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11793 same embryo
 EMAGE:11797 same embryo
 EMAGE:11798 same embryo
 EMAGE:11792 same embryo
 EMAGE:11795 same embryo
 EMAGE:11796 same embryo
 EurExpress:euxassay_007174 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS