EMAGE mouse gene expression spatial database

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EMAGE:12916

Ube2l6 ubiquitin-conjugating enzyme E2L 6 ( MGI:1914500)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_013712. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_013712_01	euxassay_013712_02	euxassay_013712_03	euxassay_013712_04

euxassay_013712_05	euxassay_013712_06	euxassay_013712_07	euxassay_013712_08	euxassay_013712_09

euxassay_013712_10	euxassay_013712_11	euxassay_013712_12	euxassay_013712_13	euxassay_013712_14

euxassay_013712_15	euxassay_013712_16	euxassay_013712_17	euxassay_013712_18	euxassay_013712_19

euxassay_013712_20	euxassay_013712_21	euxassay_013712_22	euxassay_013712_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12916_wholemount_strong.wlz

12916_wholemount_moderate.wlz

12916_wholemount_weak.wlz

12916_wholemount_possible.wlz

12916_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12916_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

liver

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T31656
Entity Detected:	Ube2l6, ubiquitin-conjugating enzyme E2L 6 ( MGI:1914500)
Sequence:	sense strand is shown >T31656 CCTGCTGGAATCTGCTGGTGCCCCACGCTCCAACCCGAGATGATGGCCAGCAAGCGAGTGGCGAAAGAGC TGGAGAGTCTTTCGAAGGAGCTGCCGCCATACCTTCGCCAACTGTCTAGTGACGATGCCAATGTGCTTGT GTGGCACATGCTCCTGCTGCCAGACCAGCTTCCCTATGGCCTCAAAGCCTTCCAAGTGCGGATTGATTTC CCCAGGGAGTATCCACTCAAGCCTCCCACTTTGAGATTCACCACCAAGATCTACCACCCCAACGTCAGGG AGGATGGTCTGGTGTGCCTGCCCCTCATCAGCAATGAGAACTGGAAGCCTTACACCAAGCCTTATCAAGT CTTGGAGGCCCTCAATGTGCTGGTGAGTAAACCGAATCTGGAAGAGCCTGTGCGTCTGGAACTTGCTGAC CTCCTGACTCAGAACCCGGAGATGTTCAGGAAGAAGGCAGAAGAGTTCACCCTTAAATTCGGAGTGGACC GGCCCTCTTAATTCTGTTCTGAAGCCTGGATCGTCTGCTTAGCAGATGGATATCACCGACTGGTGCCCGA GGCCTTGGGAAGCTCACCCTGTGCCTAAGTTTTCCTTTGTAGTTGCTAATTATGAATCTTGTACCTGGTG TGTATGTATGTGATGGAGGTGGGGGGGCCTGTGTGATGTGTGCTCCTTCCCTGAGCTGTCTGGCTGTAGA TGTACCATCCCCACATCCTCCTTGGCTTCAGAGCCAGTGGGAGTTAGGTACACACAGTTTCAGGCCTGCT TTCCAGCTCTCTCTGTCTTAGGCCACCTTTCAGGCCAATTGGCAGAAAATTGAATGCCCCAGGGCCCAGG CACCAAGGGGTGAGAAAGGCAG
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:2651702), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 12374. Forward Primer - name:012374_F_IRAV08-11_L15_Ube2l6, sequence:CCTGCTGGAATCTGCTGG; Reverse Primer - name:012374_R_SP6_IRAV08-11_L15_Ube2l6, sequence:CCTGCCTTTCTCACCCCT. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12914 same embryo
	EMAGE:12913 same embryo
	EMAGE:12915 same embryo
	EurExpress:euxassay_013712 same experiment
	MGI:4829055 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source