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EMAGE:13420

A730080H06Rik RIKEN cDNA A730080H06 gene ( MGI:2443380)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13420 EMAGE:13420 EMAGE:13420 EMAGE:13420 EMAGE:13420
"Pseudo-wholemount" of euxassay_017506. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017506_01 euxassay_017506_02 euxassay_017506_03 euxassay_017506_04
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euxassay_017506_05 euxassay_017506_06 euxassay_017506_07 euxassay_017506_08 euxassay_017506_09
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euxassay_017506_10 euxassay_017506_11 euxassay_017506_12 euxassay_017506_13 euxassay_017506_14
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euxassay_017506_15 euxassay_017506_16 euxassay_017506_17 euxassay_017506_18 euxassay_017506_19
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euxassay_017506_20 euxassay_017506_21 euxassay_017506_22 euxassay_017506_23 euxassay_017506_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13420Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13420_wholemount_strong.wlz
13420_wholemount_moderate.wlz
13420_wholemount_weak.wlz
13420_wholemount_possible.wlz
13420_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13420_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39683
Entity Detected:A730080H06Rik, RIKEN cDNA A730080H06 gene ( MGI:2443380)
Sequence:sense strand is shown

>T39683
CTCATCACCAGAGTAACCTCCCTCTGGGAAGGTGGAAGGTACACAGACGATGTAATGCATGAGGAAGTCT
GGCAGGAGAATGAATTTGAAGAATTAGGCAACACTCTGAAACTAAAGAGCCAGCAAGCCTTGAACCAGTG
GTGATAAGTGGGAGTTGTATATGAGCAAGATGAAACTTACTATGGGTCACAAAGAGAACTGACTGGTGAC
CACAGTGAATAAGAACTCAATGGATACTTGAGGTTTACTGGAAGAGTAATGGAGGGTGTGTGGTAGAAAT
ATATTCATGTATGAAGAGGTAATAATCTGCTAGTAAAGTACAAATGGAATCAGTATAGAGCTAAGACTTG
GATTCGGGCTTTTTTGTTTTTTTGTTTGTCTCAAGATTTTTCTGTATTCAAATGTGAATCTTTTTATTAC
TGAGTAGTATTCTACAGTACAGATCTACCACAGTTTGTATAGCCACTCACCTATTCTGGATTAA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 78488. Forward Primer - name:078488_F_cDNA_A730080H06Rik, sequence:CTCATCACCAGAGTAACCTCCC; Reverse Primer - name:078488_N_SP6_cDNA_A730080H06Rik, sequence:TTAATCCAGAATAGGTGAGTGGC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13419 same embryo
 EMAGE:13417 same embryo
 EMAGE:13421 same embryo
 EMAGE:13418 same embryo
 EMAGE:13413 same embryo
 EMAGE:13414 same embryo
 EMAGE:13415 same embryo
 EMAGE:13416 same embryo
 EurExpress:euxassay_017506 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS