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EMAGE:13427

Slit1 slit homolog 1 (Drosophila) ( MGI:1315203)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427
"Pseudo-wholemount" of euxassay_017454. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017454_01 euxassay_017454_02 euxassay_017454_03 euxassay_017454_04
EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427
euxassay_017454_05 euxassay_017454_06 euxassay_017454_07 euxassay_017454_08 euxassay_017454_09
EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427
euxassay_017454_10 euxassay_017454_11 euxassay_017454_12 euxassay_017454_13 euxassay_017454_14
EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427
euxassay_017454_15 euxassay_017454_16 euxassay_017454_17 euxassay_017454_18 euxassay_017454_19
EMAGE:13427 EMAGE:13427 EMAGE:13427 EMAGE:13427
euxassay_017454_20 euxassay_017454_21 euxassay_017454_22 euxassay_017454_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13427Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13427_wholemount_strong.wlz
13427_wholemount_moderate.wlz
13427_wholemount_weak.wlz
13427_wholemount_possible.wlz
13427_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13427_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9169
Entity Detected:Slit1, slit homolog 1 (Drosophila) ( MGI:1315203)
Sequence:sense strand is shown

>T9169
CTGGAGGGAGAGGGAGACGCCGGCAGCGAGCACTGGGAGAGGAGCTGAGCGCCCTCCGCTTAAGACGCCT
TTCCTGGGTCTACGCACAGACGCTGTCGCTGGGAGCATCTAGGTACCACTCGATCCGCAAGGGCGCATCG
CACGATTCCACCGGCTCTTCGGTCCTTCGGTGGGGATAGCACCTGGAGCTAGCCCCGGACGGGGATGGTC
AGCGGCTGCGGCCGTCTGGCACGCGAACGGGACACGGCGAAGGCACCATGGCGCTAACGCCCCAGCGCGG
GTCCTCTTCGGGGTTGAGCCGACCGGAGCTGTGGCTGCTGCTGTGGGCAGCCGCGTGGCGCCTGGGGGCC
ACGGCGTGCCCCGCCCTCTGCACCTGCACCGGTACGGTGGACTGCCACGGCACGGGTTTGCAGGCCATCC
CCAAGAACATCCCACGGAACACCGAGCGCCTGGAACTCAACGGCAACAACATCACTCGGATCCACAAGAA
TGACTTTGCTGGCCTCAAGCAGCTTCGAGTGTTGCAGCTGATGGAGAACCAGATCGGAGCTGTGGAACGC
GGAGCTTTTGATGACATGAAGGAGCTAGAGCGCCTACGGCTGAACCGCAACCAGCTACAAGTGTTGCCTG
AACTACTGTTCCAGAACAACCAGGCTCTATCCAGACTGGACCTGAGTGAGAATTTTCTCCAGGCTGTGCC
CAGGAAGGCTTTTCGGGGAGCCACAGACCTCAAAAATCTACAGCTGGACAAGAACCGGATCAGCTGCATC
GAGGAAGGGGCCTTCCGTGCCCTACGGGGACTGGAGGTTCTGACCCTGAACAACAACAACATCACCACCA
TCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTTCCGGCTGCACTCCAACCACCTGTTCTG
TGACTGCCACCTGGCCTGGCTCTCTCAGTGGCTGAGACAGAGGCCCACCATCGGACTCTTCACCCAGTGC
TCTGGGCCCGCCAGCCTTCGGGGCCTCAACGTGGCAGAGGTGCAAAAGGGCGAGTTCAGCTGCTCAGGCC
AGGGGGAGGCTGCGGGAGCACCTGCCTGCACCCTCTCGTCCGGTTCCTGCCCAGCCATGTGCAGCTGTAG
CAGCGGCATCGTGGACTGCCGTGGCAAGGGCCTCACTGCCATCCCTGCTAACCTTCCAGAGACCATGACA
GAGATCCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGC
GCAGGATAGACCTGAGCAACAACCAGATTGCAGAGATTGCACCCGACGCCTTCCAAGGCCTGCGCTCCTT
GAATTCCCTGGTCCTCTATGGCAACAAGATTACAGACCTGCCCCGAGGTGTATTTGGAGGCCTGTACACA
CTCCAGCTGCTGCTTCTAAATGCCAACAAGATCAACTGCATCCGGCCTGATGCCTTCCAGGACCTGCAGA
ACCTCTCTCTGCTCTCCCTGTATGACAACAAGATCCAGAGTCTCGCCAAGGGCACCTTCACCTCCCTACG
GGCCATCCAGACACTGCATCTGGCCCAGAATCCTTTCATCTGTGACTGTAACCTCAAGTGGCTGGCAGAC
TTCTTACGTACCAACCCCATCGAGACAACTGGGGCCCGATGTGCCAGCCCCCGGCGCCTCGCCAACAAGC
GTATTGGGCAGATCAAAAGCAAGAAGTTTCGGTGCTCAGCCAAAGAGCAGTACTTCATTCCAGGGACAGA
GGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGT
GTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCAGTCCACGACTGAGCTAC
GACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAA
AATAAACCTGAGCAATAACAAGGTGTCCGAGATCGAAGACGGGACGTTTGAGGGTGCCGCCTCTGTCAGT
GAGCTGCACCTGACTGCTAACCAGCTGGAGTCCATTAGAAGTGGCATGTTCCGGGGTCTAGATGGCTTGC
GGACCCTGATGCTGAGGAACAACCGTATCAGCTGTATCCACAACGACAGCTTCACCGGGCTGCGCAACGT
GCGGCTCCTGTCTCTCTATGACAACCACATCACCACCATCTCCCCTGGAGCCTTTGACACTCTCCAGGCC
CTGTCCACACTAAACCTCCTGGCCAACCCGTTCAACTGCAACTGCCATCTGTCATGGCTGGGCGACTGGC
TCCGGAAGAGGAAGATTGTGACGGGGAACCCTCGCTGTCAGAACCCAGACTTCCTGCGGCAGATTCCTCT
GCAGGATGTGGCCTTCCCTGACTTCAGGTGTGAGGAAGGCCAGGAGGAGGTGGGCTGCCTGCCCCGCCCA
CAGTGCCCCCAGGAGTGTGCCTGCCTGGACACAGTGGTCCGCTGCAGCAACAAGCACCTCCAGGCTCTGC
CCAAGGGCATCCCCAAGAATGTCACAGAACTCTATTTGGATGGGAACCAGTTCACACTCGTTCCGGGACA
GCTGTCTACCTTCAAGTATCTGCAGCTCGTGGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCT
TCCTTCACCAACATGAGCCAGCTGACCACGCTGATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTC
TGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCTGTCTTTGCATGGCAATGATGTCTCCACCCTCCAAGA
GGGCATCTTTGCAGACGTGACGTCTCTGTCTCACCTGGCCATTGGTGCCAACCCCCTGTACTGCGACTGC
CGCCTCCGGTGGCTCTCCAGTTGGGTGAAGACTGGCTACAAGGAACCTGGCATTGCCCGCTGTGCTGGAC
CCCCAGAGATGGAGGGCAAACTGTTACTCACCACACCTGCCAAGAAGTTTGAATGCCAAGGTCCCCCCAG
CCTGGCAGTTCAGGCCAAGTGTGATCCCTGCTTGTCCAGCCCATGCCAGAACCAGGGCACCTGCCACAAT
GACCCTCTTGAGGTATACAGGTGTACCTGCCCCAGTGGCTACAAGGGCCGACACTGTGAGGTGTCTCTGG
ACGGCTGTTCCAGCAACCCATGTGGAAATGGGGGGACCTGCCATGCCCAGGAGGGCGAGGATGCTGGCTT
CACGTGCTCCTGTCCCTCCGGCTTTGAAGGGCCGACCTGTGGAGTGGACACAGATGACTGTGTTAAGCAT
GCCTGTGTCAACGGGGGTGTCTGTGTAGATGGCGTGGGGAATTACACATGTCAGTGCCCCCTGCAGTACA
CAGGAAGGGCCTGTGAGCAGCTGGTGGACTTCTGCTCCCCGGATATGAACCCGTGTCAGCATGAGGCCCA
ATGTGTTGGCACCCCGGATGGGCCCAGGTGTGAGTGCATGCTAGGTTACACGGGTGACAACTGCAGCGAA
AATCAGGATGACTGCAAGGACCACAAGTGTCAGAACGGGGCCCAGTGTGTGGATGAAGTCAACAGCTACG
CCTGCCTCTGTGTTGAGGGCTACAGTGGACAGCTCTGTGAGATCCCACCTGCCCCCAGGAGCTCCTGTGA
GGGGACGGAGTGCCAGAATGGAGCCAACTGCGTAGACCAGGGAAGCCGGCCCGTATGCCAGTGCCTACCA
GGCTTTGGTGGCCCTGAATGTGAGAAATTGCTCAGTGTCAACTTTGTGGACCGGGACACTTATCTGCAGT
TCACTGACCTGCAGAACTGGCCTCGGGCCAACATCACTCTTCAGGTCTCCACAGCAGAGGACAATGGGAT
TCTCCTATATAATGGGGACAATGACCACATTGCAGTTGAGCTGTACCAGGGCCATGTCCGTGTTAGTTAT
GACCCAGGCAGCTACCCCAGCTCTGCTATCTACAGCGCTGAGACGATCAACGATGGGCAGTTCCACACCG
TTGAGCTGGTCACCTTCGACCAGATGGTGAACCTCTCCATCGATGGCGGCAGCCCCATGACCATGGACAA
CTTTGGCAAGCACTACACCCTCAACAGCGAGGCCCCCCTCTATGTGGGAGGGATGCCTGTGGACGTGAAC
TCAGCTGCCTTCCGCCTGTGGCAGATCCTCAATGGTACCAGCTTCCACGGTTGCATCCGGAACCTGTACA
TCAACAATGAACTGCAGGACTTCACCAAGACACAGATGAAGCCAGGCGTGGTGCCAGGCTGTGAGCCGTG
CCGCAAACTCTACTGTCTACATGGCATTTGCCAGCCCAACGCCACCCCAGGGCCTGTGTGCCACTGTGAG
GCTGGCTGGGGGGGCCTGCACTGTGACCAGCCAGTGGATGGCCCCTGCCATGGCCACAAGTGTGTCCATG
GGAAATGCGTGCCGCTCGACGCTCTTGCCTACAGCTGCCAGTGCCAGGATGGGTACTCGGGGGCTCTGTG
CAACCAGGTCGGGGCTGTGGCAGAGCCCTGTGGGGGCTTGCAGTGCCTGCATGGTCACTGCCAGGCCTCT
GCCACCAAAGGGGCACACTGTGTGTGCAGCCCAGGCTTTTCAGGCGAGCTGTGTGAGCAAGAGTCCGAGT
GCCGGGGGGACCCTGTCCGGGACTTTCACCGGGTCCAGAGGGGCTATGCCATCTGCCAGACCACACGCCC
GCTGTCGTGGGTGGAATGCCGGGGCGCGTGCCCGGGCCAGGGCTGCTGCCAGGGCCTGCGGCTGAAGCGG
AGGAAGCTCACCTTCGAGTGCAGCGATGGGACTTCGTTTGCTGAGGAGGTGGAGAAGCCCACCAAGTGTG
GCTGTGCCCAGTGCGCATAATGTGCGGGTGGCACACTAGCCGGGCTGGGGCGGGCATCACCAGGATAGCG
CCTGGATCCTGGTGGGCACGGGGTCACTGAGCTGCCTTCCCAGCGGACTGCACTGCCGGGGCAGAGGAGC
AAGGCCCGGGCTGCCATGCCCTCTCTCAAAGTGCCTTGCACAGATAGGCGCTTAATAAATATTTGTTGAA
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6827560 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6827560 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13425 same embryo
 EMAGE:13424 same embryo
 EMAGE:13423 same embryo
 EMAGE:13422 same embryo
 EMAGE:13426 same embryo
 EurExpress:euxassay_017454 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS