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EMAGE:14239

Cpsf4l cleavage and polyadenylation specific factor 4-like ( MGI:1277182)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239
"Pseudo-wholemount" of euxassay_001784. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001784_01 euxassay_001784_02 euxassay_001784_03 euxassay_001784_04
EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239
euxassay_001784_05 euxassay_001784_06 euxassay_001784_07 euxassay_001784_08 euxassay_001784_09
EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239
euxassay_001784_10 euxassay_001784_11 euxassay_001784_12 euxassay_001784_13 euxassay_001784_14
EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239 EMAGE:14239
euxassay_001784_15 euxassay_001784_16 euxassay_001784_17 euxassay_001784_18 euxassay_001784_19
EMAGE:14239 EMAGE:14239 EMAGE:14239
euxassay_001784_20 euxassay_001784_21 euxassay_001784_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14239Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14239_wholemount_strong.wlz
14239_wholemount_moderate.wlz
14239_wholemount_weak.wlz
14239_wholemount_possible.wlz
14239_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14239_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4157
Entity Detected:Cpsf4l, cleavage and polyadenylation specific factor 4-like ( MGI:1277182)
Sequence:sense strand is shown

>T4157
CTCTTTCTGCTTTTCCGGCGGGAGACGGAAGATGGAGGAGGTCATTGCCGGGCTGCAAGGGTTCACGTTC
GCCTTTGAGCTGGATGTGGAATCGCAGAAGGGCACTGGGCTCCTGCCTTTCCAGGGCATGGACAAGTCCA
GTTCAGCTGTGTGCAACTTCTTCGCTAAAGGGCTCTGTGTGAAAGGGATGCTATGCCCACTCCGGCACGA
GCAGGGTGAGAAGCTGGTGGTGTGCAAACACTGGCTTCGAGGCCTCTGCCGGAAGAGTGATTGCTGCGAC
TTCCTGCACCAGTATGACGTCAGCAAGATGCCCGTGTGCTATTTCCACTCCAAGTTCGGGAACTGCAGCA
ACAAGGAATGCCTGTTCCTGCACTTGAAGCCAGTTCTCAAGCTCCAGGACTGCCCGTGGTATAACCAAGG
GTTCTGCAAGGAAGTAGGTCCCCTGTGTAAATACCGCCATGTTCATCAAGTACTGTGTCCCAACTACTTC
ACCGGCTTCTGCCCCGAGGGACCTCAGTGCCAATTTGGGCACCCTAAGATGAGTCCTCCGTTCCATCCCA
GTAATGTGAAGCTGCAGCCTGTCAACCAGCCATGGGATTCAACAACTTCTACTGGCAACACTCTGGTGTC
CCCTTTCCAGGCAAAGCCCATGGTCCACGGTCAGAGGAGGTGGAGTCTGCCTCAGGCCTGCAGCTCAAGG
GCACACCCTGCACCTTAGGCCACCATGCCAGCAAAGTAAGCTGTACCCGTTGGAGCCATCAAAACCTAGT
CTGAAGCGAGGGAGTTGGACGTTCTCCTAGGTAAGGGCTGGCTCCATGGCCTCCTCAGGGTATTCTGTAC
CCAGTGGTCCAGTGAGCTCCATCACGGTAATGAGATGCAGGATGCAGAAAGAGCCTCCTCTACCTGGCTT
ATTTCCATTTATCCTGCACATGCCCGAGATGCCAATCATACAGCAGGATACGAGGTCAGCTGACTGTGGA
AGGGAGGAGTCATTCATGAGCCAGGAGAACAAAGTGCACTTGAAGCTGTGAACTCTACAGAGTCAGTCAG
TCAACATCCCATGCTTGGCTCCCACGCTCCCGCAGACTGCTATGGGTCAACGGCCTCAAGTGCTCCCAAA
AACGGGCAATCCGATCCAACGATTGCTTTTACTTTGACAGCTGTTTGCCTGTACAGCTTATTTATACTCG
AGAATATACTGTGTGTTCTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4483305 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4483305 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14238 same embryo
 EMAGE:14237 same embryo
 EMAGE:14241 same embryo
 EMAGE:14240 same embryo
 EMAGE:14236 same embryo
 EurExpress:euxassay_001784 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS