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EMAGE:14295

Tlr4 toll-like receptor 4 ( MGI:96824)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14295 EMAGE:14295
euxassay_004020_01 euxassay_004020_02

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14295Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14295_wholemount_strong.wlz
14295_wholemount_moderate.wlz
14295_wholemount_weak.wlz
14295_wholemount_possible.wlz
14295_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14295_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6103
Entity Detected:Tlr4, toll-like receptor 4 ( MGI:96824)
Sequence:sense strand is shown

>T6103
GTTCTACTCTTCAGTCTTCTAACTTCCCTCCTGCGACGGGGCAGATCGATTCTAGAACAAAACCAAAAGT
GCGAATGCTAAGGTTGGCACTCTCACTTCCTCTTTGAATATAGTACTTGCAGAGGGGCACCCACTGGGAG
GGAAGAGGCAGGTGTCCCAGGGACTCTGCGCTGCCACCAGTTACAGATCGTCATGTTCTCTCATGGCCTC
CACTGGTTGCAGAAAATGCCAGGATGATGCCTCCCTGGCTCCTGGCTAGGACTCTGATCATGGCACTGTT
CTTCTCCTGCCTGACACCGGGAAGCTTGAATCCCTGCATAGAGGTAGTTCCTAATATTACCTACCAATGC
ATGGATCAGAAACTCAGCAAAGTCCCTGATGACATTCCTTCTTCAACCAAGAACATAGATCTGAGCTTCA
ACCCCTTGAAGATCTTAAAAAGCTATAGCTTCTCCAATTTTTCAGAACTTCAGTGGCTGGATTTATCCAG
GTGTGAAATTGAAACAATTGAAGACAAGGCATGGCATGGCTTACACCACCTCTCAAACTTGATACTGACA
GGAAACCCTATCCAGAGTTTTTCCCCAGGAAGTTTCTCTGGACTAACAAGTTTAGAGAATCTGGTGGCTG
TGGAGACAAAATTGGCCTCTCTAGAAAGCTTCCCTATTGGACAGCTTATAACCTTAAAGAAACTCAATGT
GGCTCACAATTTTATACATTCCTGTAAGTTACCTGCATATTTTTCCAATCTGACGAACCTAGTACATGTG
GATCTTTCTTATAACTATATTCAAACTATTACTGTCAATGACTTACAGTTTCTACGTGAAAATCCACAAG
TCAATCTCTCTTTAGACATATCTTTGAACCCAATTGACTTCATTCAAGACCAAGCCTTTCAGGGAATTAA
GCTCCATGAACTGACTCTAAGAGGTAATTTTAATAGCTCAAATATAATGAAAACTTGCCTTCAAAACCTG
GCTGGTTTACACGTCCATCGGTTGATCTTGGGAGAATTTAAAGATGAAAGGAATCTGGAAATTTTTGAAC
CCTCTATCATGGAAGGACTATGTGATGTGACCATTGATGAGTTCAGGTTAACACATACAAATGATTTTTC
AGATGATATTGTTAAGTTCCATTGCTTGGCGAATGTTTCTGCAATGTCTCTGGCAGGTGTATCTATAAAA
TATCTAGAAGATGTTCCTAAACATTTCAAATGGCAATCCTTATCAATCATTAGATGTCAACTTAAGCAGT
TTCCAACTCTGGATCTACCCTTTCTTAAAAGTTTGACTTTAACTATGAACAAAGGGTCTATCAGTTTTAA
AAAAGTGGCCCTGCCAAGTCTCAGCTATCTAGATCTTAGTAGAAATGCACTGAGCTTTAGTGGTTGCTGT
TCTTATTCTGATTTGGGAACAAACAGCCTGAGACACTTAGACCTCAGCTTCAATGGTGCCATCATTATGA
GTGCCAATTTCATGGGTCTAGAAGAGCTGCAGCACCTGGATTTTCAGCACTCTACTTTAAAAAGGGTCAC
AGAATTCTCAGCGTTCTTATCCCTTGAAAAGCTACTTTACCTTGACATCTCTTATACTAACACCAAAATT
GACTTCGATGGTATATTTCTTGGCTTGACCAGTCTCAACACATTAAAAATGGCTGGCAATTCTTTCAAAG
ACAACACCCTTTCAAATGTCTTTGCAAACACAACAAACTTGACATTCCTGGATCTTTCTAAATGTCAATT
GGAACAAATATCTTGGGGGGTATTTGACACCCTCCATAGACTTCAATTATTAAATATGAGTCACAACAAT
CTATTGTTTTTGGATTCATCCCATTATAACCAGCTGTATTCCCTCAGCACTCTTGATTGCAGTTTCAATC
GCATAGAGACATCTAAAGGAATACTGCAACATTTTCCAAAGAGTCTAGCCTTCTTCAATCTTACTAATAA
TTCTGTTGCTTGTATATGTGAACATCAGAAATTCCTGCAGTGGGTCAAGGACCAGAAGCAGTTCTTGGTG
AATGTTGAACAAATGACATGTGCAACACCTGTAGAGATGAATACCTCCTTAGTGTTGGATTTTAATAATT
CTACCTGTTATATGTACAAGACAATCATCAGTGTGTCAGTGATCAGTGTGATTGTGGTATCCACTGTAGC
ATTTCTGATATACCACTTCTATTTTCACCTGATACTTATTGCTGGCTGTAAAAAGTACAGCAGAGGAGAA
AGCATCTATGATGCATTTGTGATCTACTCGAGTCAGAATGAGGACTGGGTGAGAAATGAGCTAGTAAAGA
ATTTAGAAGAAGGAGTGCCCCGCTTTCACCTCTGCCTTCACTACAGAGACTTTATTCCTGGTGTAGCCAT
TGCTGCCAACATCATCCAGGAAGGCTTCCACAAGAGCCGGAAGGTTATTGTGGTAGTGTCTAGACACTTT
ATTCAGAGCCGTTGGTGTATCTTTGAATATGAGATTGCTCAAACATGGCAGTTTCTGAGCAGCCGCTCTG
GCATCATCTTCATTGTCCTTGAGAAGGTTGAGAAGTCCCTGCTGAGGCAGCAGGTGGAATTGTATCGCCT
TCTTAGCAGAAACACCTACCTGGAATGGGAGGACAATCCTCTGGGGAGGCACATCTTCTGGAGAAGACTT
AAAAAGGCCCTATTGGATGGAAAAGCCTCGAATCCTGAGCAAACAGCAGAGGAAGAACAAGAAACGGCAA
CTTGGACCTGAGGAGAACAAAACTCTGGGGCCTAAACCCAGTCTGTTTGCAATTAATAAATGCTACAGCT
CACCTGGGGCTCTGCTATGGACCGAGAGCCCATGGAACACATGGCTGCTAAGCTATAGCATGGACCTTAC
CGGGCAGAAGGAAGTAGCACTGATGCCTTCCTTTCCAGGGATATGAATTACCTAACTCAGGAAAAGAAAC
ATAATCAAGAATCTTTACCTTTAAACTGAAGGAGAAGAGGCTAAGGCCTAGTGAGAACAGAAAGGAGAAC
CAGTCTTCACTGGGCCTTTTGAATACAAGCCATGTCATGTTCTGTGTTTCAGTTGCTTTAGAAGAGTATT
GATAGTTTCAACTGAACTGAAAGGTTTCTTACTTTCCCTTTTTTCTACTGAATGCAATATTAAATAGCTC
TTTTTGAGAGGTCCTCATTCCAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3493732 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3493732 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14293 same embryo
 EMAGE:14294 same embryo
 EurExpress:euxassay_004020 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS