EMAGE mouse gene expression spatial database

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EMAGE:14365

Nebl nebulette ( MGI:1921353)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004184. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004184_01	euxassay_004184_02	euxassay_004184_03	euxassay_004184_04

euxassay_004184_05	euxassay_004184_06	euxassay_004184_07	euxassay_004184_08	euxassay_004184_09

euxassay_004184_10	euxassay_004184_11	euxassay_004184_12	euxassay_004184_13	euxassay_004184_14

euxassay_004184_15	euxassay_004184_16	euxassay_004184_17	euxassay_004184_18	euxassay_004184_19

euxassay_004184_20	euxassay_004184_21	euxassay_004184_22	euxassay_004184_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14365_wholemount_strong.wlz

14365_wholemount_moderate.wlz

14365_wholemount_weak.wlz

14365_wholemount_possible.wlz

14365_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14365_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5004
Entity Detected:	Nebl, nebulette ( MGI:1921353)
Sequence:	sense strand is shown >T5004 CTAGTGCCAGCGTCGCCGAGCGCGGCCTGCCCCCTTGCACCTCTCCAGGCCAGTTTGACAGCGCCTGAAG CCCTTCTCCCTGCCCCGAGGTGGCGCGGGGCTCTTCGGGGGATGTCACAGCGGCTCCTCGGAGCCCCTAG TCCCCGCTGCAGCAACAGCCACCGCCCGCGGGAACCGCGACAATGAATCCCCAGTGCGCCCGCTGCGGAA AAGTGGTGTATCCCACAGAGAAAGTCAACTGTCTAGATAAGTATTGGCATAAAGGATGTTTCCACTGCGA GGTCTGCAAGATGGCTCTCAACATGAACAACTACAAAGGCTATGAAAAGAAGCCCTATTGCAATGCACAC TACCCAAAGCAGTCCTTCACCACAGTGGCGGATACACCTGAAAACCTTCGCCTGAAGCAGCAAAGTGAAC TGCAGAGCCAGGTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGCAGGGGCTTCAGCATTGTCACAGA TACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAATGTCAAATACCATGAAGATTTT GAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAGAGGGTGAGGAAGAGCA CCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGATAGAAGACCTGG GATCATTGTTGCACCTGTCCTTCCTGGAGCTTACCAGCAGAGCCATTCCCAAGGCTATGGGTACATGCAT CAGACCAGCGTGTCGTCCATGAGGTCAATGCAGCCTCCAGCACATCTAAGGACCTACCGCGCCATGTACG ATTATAGCGCCCAGGATGAAGATGAGGTCTCCTTCCGAGATGGTGACTACATTGTCAACGTGCAGCCCAT TGATGATGGCTGGATGTATGGCACCGTGCAGAGAACCGGGAGAACGGGCATGCTCCCAGCAAATTACATT GAGTTTGTGAATTAATTCTTTCTCCTTGCCCTTTGAGCTTTATTATGATGTATTCCAAACTCAATCTTTT TAAAAGATAGATGATACTTTTCAGATAACTTGGCAATTATTTTACAATAATGTATCCTTACTTTGACAAT TAGACACACAGGTACCAGGAAAAAAGGAATTGACTTTCAGGCTGGAAATGGCAGCATCCATAGTAATTCC TGTAAACAAAACCATTAGGTCTGGAGACCTGGTGCTGCTAATTGTGTTTGTGGTTTCATTCAATTGGCTA TCCAACCCTTCTGGGAAATGTATTTTTGTAGACTTTAATAGAGATGTTGATTGTCCCTTAAGTGTAACAA ATGTATGAAATTTCTTAGCTGTCACTTGGAATCATCCATAGCTAACTCTCATAGTCCAGCAACACATCCA ATAATTTAAAAACTGTTCAGCTTTTAAATCATTGGATAATTTTCAATTCAAGGGAGGATCACCTAATATA ATAAATAAATGGAAACAGTGGCAGAATGGGTCTGGTTAAAATCATATTGACTGTAGCCTTAGGGAGTCGG CAGGGAACTTAGCCTTTCCCTAGGCTGAGCGGGAGCTATTTAGTTCTCATGTGCTTCATGGTGTAGCCTA TCTCCATTTATGTTCTGTGGAGCAGTGCATCTGCTCAGGTCCCCAGAATGTCAGGACCAGGTAACTTCCC AGCTTCTCTGCAAAGGGCAAAGTCTAATGTCATCTGTACTATTTCACCAGTAGCCTCTATCCTGTTGCAT GTCTGTGGGCGTGAGCTTCTGTAACACAGCAACATCTGTAACAGCTGCTAGCCCATCCTTGTTACTAAAG TCAACTGTATGGCCACTCTCTCCCTGCCCTTCTTCTAGTTGCCCGCTCATTGGAAAACATTTTGAAAAGT TGCTTGAGGCTTTCTTGCTGCATTACACTCTAGTTTTGAAAGACTCACACCTTAGGAACTACATATATAC TCTAGTAAATAGGAGACTTATGTATTTACTGGATAGCTTTCACTCACTTAATGCCACCATTGATTTAAAA GTGGAGTGAATTGAACAGCCTCCACCGTAAGCGGAAATGGAGTATAAAGTAGCTGAAAACCAAAAACACA GAACAGCAAAGGTTTGCTCACAGTTAGACAATCTGGTCTTATACTTTGGTAATCAGTCTTCAGATGCTGG GATAGAAATCTGGCCATTAAATATGTTCATAAAAAAGGCTTCCTTTCCCCATTCCTGTTTTTGTTTTCTA AGTCACCTTCACGATTAGATTAAAAAAAAAGTCATGAGTGATTTTTTTGGTGGGGAGGGATGTCCAACAG ATAATCCACTAAGGAAGAAATCAGTGTCCGGTTTTGAGTAGTATGCAGGACTCACACACTTGTGAGTAAA CTTGTCTGGAATCTGCAGTTGAGGTCACCTGGATGTTGACATTTATTGCAACTCTGTTTTTTCATAGTGC CTCTGACTGTGACTTGCAGCTCGGTGGCATTCTTGTAAGCTCTGAAAATGAAGAGAGTAAAGTCACAAAA ATATTAAAGGATAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:5249766 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5249766 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14368 same embryo
	EMAGE:14367 same embryo
	EMAGE:14363 same embryo
	EMAGE:14364 same embryo
	EMAGE:14366 same embryo
	EurExpress:euxassay_004184 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source