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EMAGE:14368

Gtf2a2 general transcription factor II A, 2 ( MGI:1933289)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368
"Pseudo-wholemount" of euxassay_004181. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004181_01 euxassay_004181_02 euxassay_004181_03 euxassay_004181_04
EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368
euxassay_004181_05 euxassay_004181_06 euxassay_004181_07 euxassay_004181_08 euxassay_004181_09
EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368
euxassay_004181_10 euxassay_004181_11 euxassay_004181_12 euxassay_004181_13 euxassay_004181_14
EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368 EMAGE:14368
euxassay_004181_15 euxassay_004181_16 euxassay_004181_17 euxassay_004181_18 euxassay_004181_19
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euxassay_004181_20 euxassay_004181_21 euxassay_004181_22 euxassay_004181_23 euxassay_004181_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14368Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14368_wholemount_strong.wlz
14368_wholemount_moderate.wlz
14368_wholemount_weak.wlz
14368_wholemount_possible.wlz
14368_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14368_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7875
Entity Detected:Gtf2a2, general transcription factor II A, 2 ( MGI:1933289)
Sequence:sense strand is shown

>T7875
CGGGCTCCCTACCTGGCTCTGCTACCGCCGTGGCGGAAGCGCCTTCCCTCAGGACATCAATGCAAGCCTG
AAGAAAAAGTAATTGCTTCCTTTTAAGCCATGGCCTATCAGTTATACAGAAATACAACTTTGGGGAACAG
TCTTCAAGAGAGCCTTGATGAGCTCATACAGTCTCAACAGATCACCCCCCAGCTTGCGCTTCAAGTTCTA
CTTCAGTTTGATAAAGCTATAAATTCAGCATTGGCTCAGAGAGTCAGGAACAGAGTCAATTTCAGGGTAA
GGATGTCTTCCTGCATCTGGAAGTCTGTACTGCTAACTCTGAGAGCGTACGTGGACTTAACTCACCATAG
CAAGATTTGGTTAGTCTGGTTTGGGAACTTGTTCTATAATCGTTGTGCTAAGTTCATCCATTCCATGTGT
TTCAGAATTGCTTTTAGATTTTAATTTTATTGTTTCACAAATCTTCCTATATATGTTTGGCTTTTTTCCC
CTGGAGAATTACTGAGATTTCAAAGGCCTGAAAGTATTAGCTGCAAGATGGAAGGGCTCTCTAAATACAT
ACAGATTCTGCGATAATGTTTGGACTTTTGTATTGAATGATGTTGAATTCAGAGAGGTGACAGAACTTAT
TAAAGTGGATAAAGTGAAAATTGTAGCCTGTGATGGTAAAAATACTGGCTCGAATACTACGGAATGAGTA
GAGAAATGCAGCTTTTTTTATGCCACCTTCTGTTATTTTCATCGCTTTTTGAAGAGAAACATGGAAGAGA
CTTTTTTTTATTTATTCTCACGGTGCAGAAATGACAACACTGTGCTATATCTACTACCCAGGGTCCCGCA
GAGAGAAGCATGCGACTCTGTTCTCGTAATGACCTTTAGTACACAGCATAAAGAAATGTAACTTTTTTTT
AATGACAAATCAAAAGTGGTTGCCTTCATAAGATTATTCTTCAATAAACTCGTTTTAAAACTTGTTGTGA
GTAATACTTGATGCAGCTGGTTAGCAGGGAATTGTCAAAAATACCAGAGAAATTGAAGAGGGGCTTGAAA
AAGGTGTCCTTCAATAAAATTTTGTTTACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
Notes:The probe template was PCR amplified from IMAGE:6505667 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6505667 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14365 same embryo
 EMAGE:14367 same embryo
 EMAGE:14363 same embryo
 EMAGE:14364 same embryo
 EMAGE:14366 same embryo
 EurExpress:euxassay_004181 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS