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EMAGE:14540

Jarid2 jumonji, AT rich interactive domain 2 ( MGI:104813)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540
"Pseudo-wholemount" of euxassay_005432. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005432_01 euxassay_005432_02 euxassay_005432_03 euxassay_005432_04
EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540
euxassay_005432_05 euxassay_005432_06 euxassay_005432_07 euxassay_005432_08 euxassay_005432_09
EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540
euxassay_005432_10 euxassay_005432_11 euxassay_005432_12 euxassay_005432_13 euxassay_005432_14
EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540
euxassay_005432_15 euxassay_005432_16 euxassay_005432_17 euxassay_005432_18 euxassay_005432_19
EMAGE:14540 EMAGE:14540 EMAGE:14540 EMAGE:14540
euxassay_005432_20 euxassay_005432_21 euxassay_005432_22 euxassay_005432_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14540Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14540_wholemount_strong.wlz
14540_wholemount_moderate.wlz
14540_wholemount_weak.wlz
14540_wholemount_possible.wlz
14540_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14540_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8776
Entity Detected:Jarid2, jumonji, AT rich interactive domain 2 ( MGI:104813)
Sequence:sense strand is shown

>T8776
AGTGGCGAAGGTTTGCATGCGGCGACTGTTGGGCGAATCTGGTTTTGGGGGAAGAGGAAGAAAAGTCGGA
TTACAAGATCAACCACCACCAACAACAATAAAAACCACCAGGATATTTTTTTGCAAATTTCTGACGGCTT
TAAATTCATGAAGCAATTGTCCCCTTTTGCAATCAGCATTTGGATCTCAGAATGAGCAAGGAAAGACCCA
AGAGGAATATCATTCAGAAGAAATACGATGACAGCGATGGGATCCCGTGGTCAGAAGAGAGAGTTGTACG
AAAAGTCCTGTATTTGTCCCTAAAGGAATTCAAGAATGCACAGAAAAGGCAGCATGGGGAAGGCCTTGCC
GGGAGCCTGAAGGCGGTAAATGGGCTTCTTGGTAATGCCCAGGCTAAGGCACTAGGACCAGCCTCAGAGC
AGTCAGAGAACGAGAAGGATGATGCCTCCCAAGTGTCCTCTACTAGCAACGATGTTAGTTCTTCAGATTT
TGAAGAAGGGCCGTCGAGGAAAAGGCCCAGGCTGCAAGCACAAAGGAAGTTTGCTCAATCTCAGCCGAAT
AGTCCCAGCACAACTCCAGTGAAGATAGTGGAGCCTTTGCTACCCCCGCCAGCTACTCAAATTTCTGACC
TCTCTAAAAGGAAGCCTAAGACAGAAGACTTTCTTACCTTTCTCTGCCTTCGAGGTTCTCCTGCGCTGCC
CAACAGTATGGTATATTTTGGAAGCTCTCAGGATGAGGAGGATGTCGAAGAGGAAGATGATGAGACGGAA
GATGTCAAAGCAACCACCAACAATGCTTCATCTTCGTGCCAGTCAACCCCCAGGAAAGGAAAAACCCATA
AGCATGTACACAACGGGCACGTTTTCAATGGCTCCAGTAGGTCAGCACGGGAGAAAGAGCCTGCTCACAA
ACACAGAAGCAAAGAGGCCACTCCGGGGAAGGAGAAGCACAGCGAGCCCAGGGCAGACAGCCGGAGAGAA
CAGGCTTCAGGGGCTCAGCCCACGGCCGCCTCGGCTGCGGCTTCCTCTGCCAAGGGACTTGCTGCCAACC
ACCAACCTCCCCCTTCGCATCGGTCTGCTCAGGACTTACGGAAACAGGTGTCTAAGGTAAATGGAGTCAC
TCGAATGTCATCTCTGGGTGCAGGTACAAACAGTGCCAAAAAGATCCGAGAAGTCAGACCTTCACCATCC
AAAACTGTGAAGTACACTGCCACAGTGACCAAGGGGACTGTCACATACACCAAAGCCAAGAGAGAACTGG
TCAAGGAAACCAAACCCAACCACCACAAACCCAGTTCAGCTGTCAACCACACAATCTCAGGGAAAACTGA
AAGTAGCAATGCAAAAACCCGCAAACAGGTGCTATCCCTTGGGGGGGCGTCCAAGTCCACCGGGCCTGCT
GCCAGTGGCCTCAAGGCCAGCAGCAGGTTGAACCCAAAGTCATGCACTAAGGAGGTGGGGGGGCGGCAGC
TGAGGGAGGGGCTGCGGAATTCCAAAAGGAGACTGGAAGAGGCACAGCAAGTGGACAAGCCGCAGTCACC
CCCCAAGAAGATGAAGGGGGTGGCAGGCAATGCTGAAGCCCCTGGCAAAAAGGCCTCAGCGGCTTCAGGA
GAAAAGTCTCTGCTGAATGGACACGTGAAGAAGGAAGTGCCCGAGCGAAGTTTGGAAAGGAATCGGCCAA
AGCGGGCCGCGGCTGGCAAGAATATGCTGGGCAAACAAGCACATGGCAAGACAGAGGGCACCCCCTGTGA
AAATCGTTCTACCTCGCAACCCGAGTCCTCGCACAAGCCGCATGACCCACAGGGCAAGCCAGAGAAGGGG
AGCGGCAAGTCTGGGTGGGCAGCGATGGACGAGATCCCTGTCCTCAGGCCCTCCGCCAAGGAGTTCCACG
ACCCGCTCATCTACATCGAGTCAGTACGTGCTCAGGTGGAGAAGTACGGGATGTGTCGCGTGATTCCCCC
TCCAGACTGGCGGCCAGAGTGCAAGCTCAACGATGAGATGCGCTTTGTCACGCAGATCCAGCACATCCAT
AAGCTGGGCCGGCGCTGGGGCCCCAACGTGCAGCGGCTAGCCTGCATAAAGAAGCACCTCAGATCTCAGG
GCATCACCATGGATGAGCTCCCCCTCATAGGAGGCTGTGAGCTCGACCTGGCCTGCTTTTTCCGGCTGAT
TAATGAGATGGGCGGCATGCAGCAAGTGACTGACCTCAAAAAATGGAACAAACTAGCAGACATGCTGCGC
ATTCCCAAAACTGCCCAGGACCGGCTGGCCAAGCTGCAGGAGGCCTACTGCCAGTACCTGCTTTCCTATG
ACTCCCTGTCCCCCGAGGAGCACCGACGGCTGGAGAAGGAGGTGCTGATGGAGAAGGAGATCCTGGAAAA
GCGCAAAGGGCCATTAGAGGGGCACACGGAGAGCGACCACCACAAGTTCCACTCCCTGCCCCGCTTTGAG
CCCAAGAATGGGCTCGTCCACGGTGTCACACCTAGGAATGGATTCCGTAGCAAGCTCAAGGAGGTGGGCC
GGGCCCCACTGAAGACGGGCCGGCGGCGGCTGTTCGCTCAGGAAAAAGAAGTGGTCAAAGAGGAGGAAGA
AGACAAAGGTGTCCTCAATGACTTCCACAAGTGCATCTATAAGGGAAGATCTGTTTCTCTAACAACTTTT
TATCGAACAGCAAGAAACATCATGAACATGTGTTTCAGCAAGGAGCCCGCACCAGCAGAGATTGAGCAAG
AGTACTGGAGGTTAGTGGAAGAGAAGGACTGTCATGTGGCAGTTCACTGCGGAAAGGTGGACACTAATAC
CCATGGCAGCGGGTTCCCGGTGGGAAAATCAGAACCCTTTTCAAGGCATGGATGGAACCTCACTGTCCTC
CCAAATAACACAGGGTCCATCCTGCGTCACCTTGGTGCTGTGCCTGGAGTGACTATTCCCTGGCTAAATA
TTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAATCACCTTCCATATATTGACTACTTACA
CACTGGTGCTGACTGCATTTGGTATTGCATTCCTGCTGAGGAGGAGAACAAGCTGGAGGACGTAGTCCAC
ACTCTGCTGCAGGGCAATGGTACCCCAGGGCTGCAGATGCTGGAGAGCAATGTAATGATCTCCCCAGAGG
TGCTGTGCAAGAAGGGGATCAAGGTCCACAGGACTGTACAGCAGAGTGGGCAGTTTGTCGTCTGCTTCCC
GGGATCCTTTGTGTCCAAAGTATGTTGTGGCTACAACGTCTCAGAGACAGTGCACTTTGCTACCACCCAG
TGGACAAGCATGGGCTTCGAGACTGCCAAGGAGATGAAGCGCCGCCATATAGCTAAGCCATTCTCCATGG
AGAAGTTGCTCTACCAGATTGCACAAGCAGAAGCAAAAAAGGAAAATGGTCCCACCCTCAGTACCATCTC
AGCCCTTCTGGATGAGCTCAGGGATACAGAGCTGCGGCAGCGCAGGCTGTTGTTCGAGGCTGGCCTTCAC
TCTTCTGCACGCTATGGCAGCCACGACGGCAACAGCACAGTGGCGGATGGGAAGAAAAAGCCTCGAAAGT
GGCTACAGCTGGAAACTTCAGAAAGGAGGTGCCAGATCTGCCAGCACTTGTGCTACCTGTCCATGGTGGT
ACAGGAGAATGAGAATGTCGTGTTCTGCCTGGAGTGTGCACTGCGCCATGTGGAGAAGCAGAAGTCTTGC
CGTGGGCTGAAGCTGATGTACCGCTACGATGAGGAGCAGATCATCAGTTTGGTCAACCAGATATGTGGCA
AAGTGTCTGGCAAACACGGTGGCATCGAGAACTGTCTCAACAAACCCACACCAAAAAGAGGTCCCCGCAA
GAGAGCGACCGTGGATGTGCCGCCATCTCGGCTCCCATCCTCATGAAGATGCCGAACCCATGGTCACTTA
TATATTTTTTGTAATTACTATATTCTAGTTTGGAGTACTTGCTGTAGGATACAAGCTGTCTTTGCACTAG
CTCTAAAGAAGAATTTCTTCTGGTTTTAGAGAACTGATTTTGTTTTAGCATTAAACTGTTCAAGTTTTTG
TACGTAGATATCTAGATACTGCAGTCAGGTTTGGAAGCTGCCGTACACTCACTGTCTAAAACCCTTGAGG
GGCTGTATTAATTTGTATCGCCCCATGGCTGTGAAATGCCTTTTTTTTTGTTTGTTTGTTTTTGTTCTGT
TTTGTTTGGTAACTGTTGAGGAATAAAGGCTTTTTAACCCATTTTTGAAGATGGTGAAGTTTGGAGAACA
AATTTTAAAACCATCAGTCAGATGAGATTTTTCTAGATTGGAAAAGGGATAGAAGATACACACACACACA
CACACACACACACACACAGAAAAAAGAAAACTTGAAATGGCTTTACTTTGGCTGTCTTTTCTTCTGTCAT
GTGCGAAGGGAGTTTGTAACTTTTGGAACCGGAGAGCCCTGTTTCTTTGGCTGGGCGGTTATGGCAGCTG
AAGGCAAACTGTGAGGTTTGAGTGACGAGGTTCTCATACCAGCACATCACTATGCATCCGTTCGAGGGAG
AGAGAGACAAAGACAAAGACTGCCTGCCTTGGAGGGTCACTGAGGGAGACCTGTGCCTGATTTCATTAGG
AAATCCATTCTGTTATTTTTTTTTGGTGCTGTTGGCTACTTTATCAAAAAAACAAAAAACAAAAAAACAA
AAAACCCTTCAATAGCATCCTTGAGGAAAAGGAACAGCAGTTGACTGTAAGTGCTTCCCTGTCATCCATG
TGCAATTTCCCGACATTCCACCTCCATCTCTGCTTGTGTCCCTCACATCAGCATTAATCTTTGTTTCCCT
CACACTTAGAGCCACTAAGTCTGCAGTTCTTTTTGAATGTGAAACACATCTGTGCTCCTCTTGTCTATTT
TTTCTCTTCATGTTTTAACAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6406875 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6406875 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14542 same embryo
 EMAGE:14539 same embryo
 EMAGE:14538 same embryo
 EMAGE:14543 same embryo
 EMAGE:14541 same embryo
 EurExpress:euxassay_005432 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS