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EMAGE:16088

Pitpnm3 PITPNM family member 3 ( MGI:2685726)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088
euxassay_013516_01 euxassay_013516_02 euxassay_013516_03 euxassay_013516_04 euxassay_013516_05
EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088
euxassay_013516_06 euxassay_013516_07 euxassay_013516_08 euxassay_013516_09 euxassay_013516_10
EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088
euxassay_013516_11 euxassay_013516_12 euxassay_013516_13 euxassay_013516_14 euxassay_013516_15
EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088 EMAGE:16088
euxassay_013516_16 euxassay_013516_17 euxassay_013516_18 euxassay_013516_19 euxassay_013516_20
EMAGE:16088 EMAGE:16088
euxassay_013516_21 euxassay_013516_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16088Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16088_wholemount_strong.wlz
16088_wholemount_moderate.wlz
16088_wholemount_weak.wlz
16088_wholemount_possible.wlz
16088_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16088_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T45388
Entity Detected:Pitpnm3, PITPNM family member 3 ( MGI:2685726)
Sequence:sense strand is shown

>T45388
AGGGGTAATGTTTGTGTGTGTGACCCTGGGGCCAGGCCTGCCTGTGCCAGTGTTTGGATAAAGTTGACCA
TCTTTTTGCGTGCTAGGTTTCGGTAGCCGCACTAGGCAGGCTCTAACAAGAGAAGCCCCTAGCGCTGGCT
GGGCACGCGGCCAGGTAGGTGGCCGATTGCAGGTACAGCAACTGTCTGTAGAGGAGAGAGTGGCATTTGT
GTCTGCCCTCCTTGTGATATCCGGGCACCACTTTGGGGCTGGCTGTCTTATGACACAGAGAGATCGCTTT
ATGGGAGAAGATATCCCCTGGGTCCAATCTATGTATGTGGAGTTTGTCCACAATCCTGGGGACTGGGCCT
GGTGCTGACTGTTTGTCTTGCAGCTGTCCTGTTTCCTTTCTTGTTCTCAGTATCCTTATTCTCCTGTGGC
CCTTGAAGACAGTCCTCTTCCCTGAATCTTGCCTTGTGCAGCTGTGGACTCCTCCCACTTGGTCTGGCTG
TGTGCCCTGGAGTCTGTAGCTCACTCTTTGGGCC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from genomic DNA prepared from tail-tips of two wild-type C57BL/6J mice), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 209222. Forward Primer - name:209222_F_exon_A330068P14Rik, sequence:AGGGGTAATGTTTGTGTGTGTG; Reverse Primer - name:209222_N_SP6_exon_A330068P14Rik, sequence:GGCCCAAAGAGTGAGCTACAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16090 same embryo
 EMAGE:16089 same embryo
 EMAGE:16085 same embryo
 EMAGE:16087 same embryo
 EMAGE:16086 same embryo
 EurExpress:euxassay_013516 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS