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EMAGE:17183

Cyp2a4 cytochrome P450, family 2, subfamily a, polypeptide 4 ( MGI:88596)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17183 EMAGE:17183 EMAGE:17183 EMAGE:17183 EMAGE:17183
"Pseudo-wholemount" of euxassay_001556. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_001556_01 euxassay_001556_02 euxassay_001556_03 euxassay_001556_04
EMAGE:17183 EMAGE:17183 EMAGE:17183
euxassay_001556_05 euxassay_001556_06 euxassay_001556_07

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17183Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17183_wholemount_strong.wlz
17183_wholemount_moderate.wlz
17183_wholemount_weak.wlz
17183_wholemount_possible.wlz
17183_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17183_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
strong strong
single cellstrong expression: see section 02 03 04 05 06 07 moderate expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4777
Entity Detected:Cyp2a4, cytochrome P450, family 2, subfamily a, polypeptide 4 ( MGI:88596)
Sequence:sense strand is shown

>T4777
AAGCAAGCTAATTCAGCCATCACTGTCTGTCTATCACCCCACTGCCACCATGCTGACCTCAGGACTCCTC
CTGGTGGCTGCAGTGGCCTTCCTCAGCGTCCTGGTTTTGATGTCTGTCTGGAAGCAGAGAAAGCTCTCAG
GAAAGCTGCCTCCAGGACCCACCCCACTGCCCTTCGTTGGGAACTTCCTTCAGCTGAACACAGAGCAAAT
GTACAACTCTCTCATGAAGATCAGCCAACGTTATGGTCCTGTATTCACCATCTATCTGGGATCTCGCCGA
ATTGTGGTGCTGTGCGGACAGGAGACAGTCAAGGAAGCTCTGGTGGACCAAGCTGAGGAATTCAGCGGGC
GGGGCGAGCAGGCTACCTTCGACTGGCTTTTCAAAGGCTATGGCATAGCCTTCAGCAGCGGGGAGCGAGC
CAAACAGCTAAGGCGCTTCTCCATCACCACGCTGCGGGACTTCGGCGTGGGGAAGCGTGGCATCGAGGAG
CGCATCCAAGAGGAGGCGGGCTTTCTCATCGATTCATTTCGGAAGACGAACGGTGCTTTCATTGACCCCA
CCTTCTACCTTAGCCGAACAGTCTCCAATGTCATTAGCTCAATCGTCTTCGGGGACCGCTTTGACTATGA
GGACAAAGAGTTCCTGTCACTTCTTAGAATGATGCTGGGAAGCCTCCAGTTCACTGCTACCTCCATGGGG
CAGGTCTATGAGATGTTTTCTTCTGTGATGAAACACCTGCCAGGGCCCCAGCAACAGGCCTTTAAGGAGC
TGCAAGGCCTGGAGGACTTTATAACCAAGAAAGTGGAACACAATCAGCGCACGCTGGATCCCAATTCCCC
AAGGGACTTCATCGACTCCTTCCTCATCCGAATGCTGGAGGAGAAGAAGAACCCCAATACTGAGTTCTAC
ATGAAGAACTTGGTGCTGACTACACTAAATCTCTTCTTTGCTGGCACAGAGACCGTCAGCACCACCCTGC
GCTATGGCTTTCTGTTGCTCATGAAGTACCCAGATATTGAGGCCAAGGTCCATGAGGAGATTGATCGGGT
GATTGGCAGGAACCGGCAGCCCAAGTATGAGGACCGAATGAAGATGCCCTATACGGAGGCTGTAATCCAT
GAGATCCAGAGATTTGCAGACCTGATCCCCATGGGCCTGGCTCGAAGGGTCACCAAGGACACCAAGTTTC
GAGATTTCCTCCTCCCCAAGGGTACTGAAGTATTTCCTATGCTGGGCTCTGTGCTGAAAGACCCCAAGTT
CTTCTCCAACCCCAAAGACTTCAACCCAAAGCACTTCCTAGATGACAAGGGACAGTTTAAGAAGAGTGAT
GCCTTTGTGCCCTTTTCCATTGGAAAACGGTATTGTTTCGGAGAAGGACTGGCTAGGATGGAACTCTTCC
TCTTCCTCACAAACATCATGCAGAACTTCCACTTCAAATCCACACAGGAACCCCAGGACATCGATGTGTC
TCCTAGACTCGTGGGCTTTGTCACGATCCCACCAACCTACACTATGAGTTTCTTGTCCCGTTGATCCTGG
GCTGCATGAGGTTAAAGGGAATGATTGAGACCAGACAAGTCAGGGGTTGAAACTTAGAAAAGGTCAAAGG
TACAGAAGAAACAGAGGACACTTCGTAGACTTGCAGAGGATATTTCAAAGGTAGCCAGAGAAGGGGGAAA
TTATACTATGTTGTCAATAGGAATAATAAAATAATAAAAGTAGATATTATTTATGGCAAAAAAAAAAAAA
A
Notes:The probe template was PCR amplified from IMAGE:5044482 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5044482 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17181 same embryo
 EMAGE:17180 same embryo
 EMAGE:17178 same embryo
 EMAGE:17179 same embryo
 EMAGE:17182 same embryo
 EurExpress:euxassay_001556 same experiment
 MGI:4824160 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS