EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17232

Foxm1 forkhead box M1 ( MGI:1347487)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008878. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008878_01	euxassay_008878_02	euxassay_008878_03	euxassay_008878_04

euxassay_008878_05	euxassay_008878_06	euxassay_008878_07	euxassay_008878_08	euxassay_008878_09

euxassay_008878_10	euxassay_008878_11	euxassay_008878_12	euxassay_008878_13	euxassay_008878_14

euxassay_008878_15	euxassay_008878_16	euxassay_008878_17	euxassay_008878_18	euxassay_008878_19

euxassay_008878_20	euxassay_008878_21	euxassay_008878_22	euxassay_008878_23	euxassay_008878_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17232_wholemount_strong.wlz

17232_wholemount_moderate.wlz

17232_wholemount_weak.wlz

17232_wholemount_possible.wlz

17232_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17232_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5645
Entity Detected:	Foxm1, forkhead box M1 ( MGI:1347487)
Sequence:	sense strand is shown >T5645 ACAACTGAAAGCGGCGCTGCGGGACCCACCCCCGGCCCGGGCTCCCCCCGTCACCCCGCCCCGGGCTCCC ACCCCGGCCGTCCCGCCGGGACCCGCCGCCCGGGCCCGGCTCGGCCCCGCGTGGAGCAGACGCGGCCTGT GAGGGTCAAAGCTTGCGATTCTCGATGGAGAGCGAAAGCACAGCCTCACGATGAGAACCAGCCCCCGCCG GCCACTGATTCTCAAAAGACGGAGGCTGCCCCTTCCTGTCCAGAATGCCCCGAGTGAAACATCAGAGGAA GAAGCAAAGAGGTCCCCTGCCCAGCCGAAGCCTGCTCCAGCACAGGCCTCCCAAGAGGTGGCAGAGTCCA GCTCTTGCAAATTTCCAGCCGGAATCAAGATTATCAACCACCCCACCACGCCCAACACACAAGTGGTGGC CATCCCCAGCAACGCTGATATCCAGAGCATCATCACAGCGCTAACTGCCAAAGGGAAGGAGAGCGGCAGC AGCGGGCCCAACCGGTTCATCCTCATCAGCTCTGGGGGGCCCTCCTCTCACCCTTCCCAGCCTCAAGCCC ACAGCAGCCGGGATTCCAAGAGAGCAGAGGTGATCACGGAGACGTTGGGACCGAAGCCAGCAGCTAAGGG TGTGCCTGTTCCCAAGCCTCCTGGAGCCCCTCCAAGGCAAAGACAGGAGAGCTATGCTGGTGGTGAGGCG GCAGGCTGCACGCTGGACAACAGCTTAACCAATATCCAGTGGCTTGGAAAGATGAGTTCTGACGGGCTGG GCCCCTGCAGCGTTAAGCAGGAACTGGAAGAGAAGGAGAATTGTCACCTGGAGCAGAATCGGGTTAAGGT TGAGGAGCCCTCAGGAGTGTCAACATCTTGGCAGGACTCTGTGTCTGAGAGGCCACCCTACTCTTATATG GCCATGATACAGTTTGCCATCAACAGCACTGAGAGAAAGCGCATGACCTTGAAGGACATCTACACTTGGA TTGAGGACCACTTCCCTTACTTTAAGCACATTGCCAAGCCAGGCTGGAAGAACTCTATTCGTCACAACCT TTCTCTCCATGACATGTTTGTTCGAGAGACATCTGCCAATGGCAAGGTCTCCTTCTGGACCATTCACCCA AGTGCCAATCGCTACTTGACATTGGACCAAGTGTTTAAGCCACTGGAACCAGGGTCTCCACAATCGCCCG AGCACTTGGAATCACAGCAGAAACGACCCAATCCTGAGCTCCATAGAAATGTGACCATCAAAACTGAAAT CCCACTGGGCGCACGGCGAAAGATGAAGCCTCTGCTCCCTCGGGTTAGCTCATACCTGGTGCCCATCCAG TTCCCAGTGAACCAGTCCCTGGTGTTACAGCCCTCAGTGAAGGTTCCCTTGCCTCTGGCAGCATCGCTTA TGAGCTCAGAGCTCGCCCGTCATAGCAAGCGAGTCCGCATTGCACCCAAGGTGTTGCTATCCAGTGAAGG AATAGCCCCGCTTCCTGCCACAGAACCACCGAAGGAGGAGAAACCCCTGCTTGGAGGGGAAGGGCTGTTG CCTTTACTTCCTATTCAGTCCATTAAGGAAGAAGAAATGCAGCCTGAGGAGGACATAGCACACTTAGAGA GGCCTATCAAAGTGGAGAGCCCTCCCTTGGAAGAGTGGCCCTCTCCATGTGCATCGCTCAAAGAGGAGCT ATCCAACTCCTGGGAAGATTCTTCCTGCTCTCCTACCCCAAAGCCCAAGAAGTCCTACTGTGGGCTCAAG TCCCCAACGCGCTGTGTCTCAGAAATGCTGGTGACTAAGCGAAGAGAGAAAAGGGAGGTGAGCCGATCCC GGAGGAAACAGCACCTTCAGCCCCCCTGTCTGGATGAGCCTGACCTGTTCTTCTCAGAGGACTCCAGCAC ATTTCGGCCAGCCGTGGAGCTCCTGGCGGAGTCTTCCGAGCCTGCACCCCACCTCAGCTGCCCTCAGGAA GAGGGAGGACCTTTCAAGACCCCCATCAAGGAGACATTGCCTGTCTCCTCCACTCCTAGCAAGTCTGTGC TCTCTAGAGACCCTGAGTCCTGGAGGCTCACACCTCCAGCCAAAGTTGGGGGGTTAGATTTCAGCCCAGT ACGAACCCCCCAGGGTGCCTTTGGCCTTCTGCCTGACTCACTGGGGTTGATGGAGCTGAATACCACCCCT TTGAAAAGTGGTCCTCTCTTTGACTCGCCCCGGGAGCTCCTCAACTCAGAGCCCTTTGACCTGGCCTCTG ACCCCTTCGGCAGCCCTCCACCACCACATGTGGAAGGCCCCAAGCCTGGCTCCCCCGAGCTGCAGATTCC CAGCCTTTCAGCCAACCGTTCTCTCACAGAAGGCCTTGTCCTGGACACAATGAATGATAGCCTCAGCAAG ATCCTTCTAGACATCAGTTTCCCTGGCCTGGAGGAGGACCCTCTGGGCCCTGACAACATCAACTGGTCTC AGTTCATCCCTTAGCTGCGATAGAGGCAAGGCCTTGCCCCTGCCACTCAAGCCGCCTGCTATCCTGGCAC TTGTGTGGCTCAGGGTACCCCAAGCCGTCTGAGGGAAGCTAGCAGGCAAGGGCTGAGCTGTGCCCTTTGA CCTAATTATGTCAAGATGATAGCCGCATCTAAGCCACACCAGGACCTATGCAAGCAGTAGGATCCCCCAG AGTCCGAGTCCTCCACTCCCTGCTGGCAAGTGAAGTGGGTGTGACGAGCCATGAGGACCAGGAAGTGCCC ATTAGTCACTCGGTGCTCCTGGCAGGGTAACCCTTATAAATGGTGTCAGCTCCCCAAGTTGTCCTGTAAC TATAAATGTAAGCGTATTTCCTTAGCTCATTATCCAGAGATGGCCAGGATGGGGAGAGGGACGGGGTTGC ACTTTGCTTCTGCTTGTGGCCTCTGGGGGAAGGACCTGCAGTGCAGTCTCTCCACACTGTGGGTTCTGCT ATAGGCTTCTAGAGATACAGGTTGCCGTGCCAGGATCCTGCTTACTGCCCTTTCCTCGCAGCTCCCCAAG TCTCCAAGTCAGTGGTACTGCATGAAGAAATCCTGCTGTGAAAGCCTATTGGATTCGGGTGTAGGGAGAT GGGTGTGCCTGAAGCAAAAGCATGGGTACTCACAGGAGTCCTATTAGGTGTTTCTCTGATAGTGTTCCCA ATCATGCCAGGGAGTCTACCACTGAGATCTCAGGCTGAGGCCTGAGAAGAAGAAAGTGACCCCTCACTTG CCTGGCTTCCTTAGCTTGCTCCTGAGCTTTGCAAAAAACCACCCTAGACCCCACTCTACAAGCTACAGGA CAACACTACTGTAACTACCTACTAAATAAAGCCCGTGGCACTGGTCTTGGAATTGAGCGAGAGGTGGAGC CTGGGGGTGATGGGCAAGGCCTGCCCCTGCTGCATGGGCCTTCCACAGATGCTCTCTCCCGCACCCTTCT TGGACTCTGAGGTTGCCAGCTTTGTCTGTTGCGATGATTCATATCTATAATCTCAGCCTTTGAGAGGTAG AGGCTGGAGGATCAGCCCTCTATGCTACATGAGATCCTGCCAACAGAGTCCAGTTCCCACTGTTCCCTGC CCTGCCCACCTCTTCCTTGCCACCCCAGACCTTGTTCCATGGGACCAGACTCTGACTTAGGTCCTTGTTG ATCCCTTGGTAACAACAGCAGTTATAGTCCTCCAATTCCCTCCCATTCCATTCAGTATTCAGGCCTGAAA GCCGAAACTGTTGTAGGTGTCTCATTACCACCTCTATCCCAGCTCCAAGCCCAGGAGCCAGCCCCCTTCC TGCTCCTGAGCCTTCCCAGGCAAGGCTCTCGCTCAGCAGCTCCTGTTACCAAGTTTGTAACCAGAACTGA CAGCGAAAAGCATCAGGGACTGAGGAGCCTCCCAGGACAGGCAAGGGCCTCCTCCCAGCAGCACCAGTCA GGAAGCATCACCATAGCAACCCTAGCAGCAAACAATGGTACCAGAAAGGGCTTTCCTCCAAAGCTGCCTC TCCTGGCTCTGTGGCTCAGAGGAAGAATGGCCAACATCCCGAAGAAAACATCCCTCCAAAAGTCATGCCT GAGCCAAGTATCTCGTACCAGGGAGCCTTTCCTGAAGGTAGAGTGGGGCCCAACAACGCAGCCAGCCTTT CAGGTTGTCCTGAGCAGTAGTCTCTGGTACATAAGCCAGTTTCTGCTTTCATCCTGTGGTACCCTAAGTT GGAGCTCAGAACAGAAAGGAGAAGCCTGGGCAACAGGTTGAAGAGGCCTTATCTAAAGGACTTGGGATCA GAAATGTGCTTAGCTTTGGGATTTACTTTTGGATTTTGGAGTATGTGTATGTATGTCAAACTGTTGGGCA AGGACCCCAAACTTAATATAAAATTCCTTTGTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6515008 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6515008 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17234 same embryo
	EMAGE:17237 same embryo
	EMAGE:17236 same embryo
	EMAGE:17235 same embryo
	EMAGE:17233 same embryo
	EurExpress:euxassay_008878 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source