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EMAGE:17559

Syce2 synaptonemal complex central element protein 2 ( MGI:1919096)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559
"Pseudo-wholemount" of euxassay_005878. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005878_01 euxassay_005878_02 euxassay_005878_03 euxassay_005878_04
EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559
euxassay_005878_05 euxassay_005878_06 euxassay_005878_07 euxassay_005878_08 euxassay_005878_09
EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559
euxassay_005878_10 euxassay_005878_11 euxassay_005878_12 euxassay_005878_13 euxassay_005878_14
EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559 EMAGE:17559
euxassay_005878_15 euxassay_005878_16 euxassay_005878_17 euxassay_005878_18 euxassay_005878_19
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euxassay_005878_20 euxassay_005878_21 euxassay_005878_22 euxassay_005878_23 euxassay_005878_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17559Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17559_wholemount_strong.wlz
17559_wholemount_moderate.wlz
17559_wholemount_weak.wlz
17559_wholemount_possible.wlz
17559_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17559_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8362
Entity Detected:Syce2, synaptonemal complex central element protein 2 ( MGI:1919096)
Sequence:sense strand is shown

>T8362
GGCACGAGGCGGGAAAAGACGGAATGGAGCGCCACGGAGTGGCCGCGCCTCCCGTGGAGTTAAAGGACCA
GGAGCCGCCGGCGATTGTGGAGAGCGGAGAGCATCGGCAGAGTGAGAACCACGAGGAGACGCCCGGCTCA
GTGGCCCCGAGTGCCAGTTGCCAGCTGCCAGGACCCTTCTCCTCTCTGGACTCTAGCATTGAAACCCTGA
AGAAGAAAGCCCAGGAACTGATTGAAAACATCAATGAAAGCAGGCAGAAGGACCATGCACTTATGACCAA
CTTCAGGGACAGCCTCAAGATGAAGGTCTCAGATCTGACAGAAAAGTTGGAGGAGAGGATGTACCAGGTG
TACAGCCACCACAGCAAAATCATTCAGGAAAGACTACAAGAATTTACCCAGAAGATGGCAAAGATCAACC
ATCTGGAAATGGAGCTTAAACAAGTCTGCCAAACTGTGGAAACGGTGTACAAGGACCTATGTGTCCAGTC
TGAGGTTCCCACTTGCGAAGAACAGAATTACAAAGATGGTGAATGCTGACTTCTGCTAAGAGGCTTCCAT
CTCAATGTGAGAAGGCACAGAGGCTGCTGTTTGAGGCATGCTGATATTGTTTTTTATAGTTCTGTAACCC
AACACAAAGCCACCAATGCTCTTTGTGCTAATTACCGTAGTGTGACAAGGTTTGACCCTGCCATAAGCCT
TGCCTTAGCAAATTCTCCCAACCCACATCTGTAGTTGATTAAATGTTTTGATTTCAAAAAAAAAAAAAAA
AAAAAAGAAAC
Notes:The probe template was PCR amplified from IMAGE:3374002 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3374002 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17558 same embryo
 EMAGE:17560 same embryo
 EurExpress:euxassay_005878 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS