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EMAGE:17609

0610037L13Rik RIKEN cDNA 0610037L13 gene ( MGI:1921348)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609
"Pseudo-wholemount" of euxassay_005944. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005944_01 euxassay_005944_02 euxassay_005944_03 euxassay_005944_04
EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609
euxassay_005944_05 euxassay_005944_06 euxassay_005944_07 euxassay_005944_08 euxassay_005944_09
EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609
euxassay_005944_10 euxassay_005944_11 euxassay_005944_12 euxassay_005944_13 euxassay_005944_14
EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609
euxassay_005944_15 euxassay_005944_16 euxassay_005944_17 euxassay_005944_18 euxassay_005944_19
EMAGE:17609 EMAGE:17609 EMAGE:17609 EMAGE:17609
euxassay_005944_20 euxassay_005944_21 euxassay_005944_22 euxassay_005944_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17609Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17609_wholemount_strong.wlz
17609_wholemount_moderate.wlz
17609_wholemount_weak.wlz
17609_wholemount_possible.wlz
17609_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17609_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4831
Entity Detected:0610037L13Rik, RIKEN cDNA 0610037L13 gene ( MGI:1921348)
Sequence:sense strand is shown

>T4831
CCACGCGTCCGGAGGCTAGTCGCCATTGGGGCATCCCGTCTGGTAGTAGCCCAGTGAGAGATGGGTCCGA
GGCGGCGAGGGGCTCAGAGTGGCGAGCTCAGAGCAGGAGAGAATGGAAGGCGTGAGGCTCGGGTGGCGGG
GCTTGAGTCGGGAGGGGCGGGGTGGGGCGTGGCACGCAGCTGAGCGGACGAGGCCCTGCACTCAGCGTGT
CCCGCCCTCTTCTCAGAAAATCGCACTGCAGCTCAAAGCCACGCTGGAGAACGTCACGAACCTTCGGCCA
GTGGGCGAGGACTTCCGGTGGTACCTGAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGAGAAGTGGC
AATACATCCGGCTGATGGACAGCGTGGCGCTGAAAGGAGGCCGAGGCAGTGCCTCCATGGTCCAGAAGTG
CAAGCTATGTGCACGGGAAAACTCTATTGACATTTTGAGCAGCACCATCAAGGCTTACAACGCTGAAGAC
AATGAGAAGTTCAAGACGATAGTGGAGTTTGAGTGCCGGGGCCTTGAACCAGTTGACTTCCAGCCCCAGG
CTGGGTTTGCTGCTGACGGTGTGGAGTCAGGGACAGTCTTCAGTGACATTAATCTGCAAGAAAAGGACTG
GACAGACTATGATGAAAAGGCTCAGGAGTCTGTGGGGATTTTCGAGGTCACCCATCAGTTTGTGAAGTGC
TGAACTGTCTGCCCGCAAACTTGCCTGTAAGAACTAAGGAGAGACACAGCGCCCTGAGCAGCAGTTCCCA
TGGAGGCTTCTCATCTCTGCTCTCCTAGCACCTGTACCAAGTCTGCATGCCAGGGTTTGCCGCAGTTCTA
AGTCCCACCAATAAAGCCCCTGTTGGTGCCACAGTGCTGCGTGAAGGTGGTCTGAGAAATACTCCCTCCA
TTAATAAGATTGGACTCTGGAGGTCTTTGCTTTCTAATCCCTATTCTGTACCTGATCCAGTTTGCATGTG
GCTTATATAAAGGCTCTCTATCTAGCTCTTAAGAAATAGGCAGGTCAGCCTCCAGGATCAAAGGCATGAA
AGCACAAATGGCAGAGAATCCTATGGAGTGCTGCTGTGAACCCAGTAGTTCCAGCCTAAAACACTCCCCG
ATGATGATGGCACCTCCGTTAGCTGCTCATCTCACACCCAGAGCTCACTCTATAGACCATCAGGCCACCG
CGGGCACATACCCATCTACTCTACAAAGTTCCTGGCTGATGGCTCTGTTCACTTGCTGTGATAGAGTACT
TCCTGTCAGAGTCAACATGAAAGTTCTGTGGAATCAGACTCTGCATCCCCTGAAGCACCTATTGCTGGTA
CAATGTATACCCTGTTCTACCTGCAGACAACTCTTGGAGTGAAGACAGCAGTCATTGCCTCTTAAGTCTC
GTGGGACCAAAGATCCCACACAGCAGACAGAGCTATTGAGCGCAGTACTAGGCAATAAGTATGTTGTGCC
TTCATACCTGGGAAACCTGTTTCCACACACTATTTCTCCAATATTCTACTGGAGAGAAAAAAAAAAGATT
GTATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5065090 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5065090 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17607 same embryo
 EMAGE:17608 same embryo
 EMAGE:17610 same embryo
 EurExpress:euxassay_005944 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS