EMAGE mouse gene expression spatial database

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EMAGE:17630

Slc37a4 solute carrier family 37 (glucose-6-phosphate transporter), member 4 ( MGI:1316650)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005966. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005966_01	euxassay_005966_02	euxassay_005966_03	euxassay_005966_04

euxassay_005966_05	euxassay_005966_06	euxassay_005966_07	euxassay_005966_08	euxassay_005966_09

euxassay_005966_10	euxassay_005966_11	euxassay_005966_12	euxassay_005966_13	euxassay_005966_14

euxassay_005966_15	euxassay_005966_16	euxassay_005966_17	euxassay_005966_18	euxassay_005966_19

euxassay_005966_20	euxassay_005966_21	euxassay_005966_22	euxassay_005966_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17630_wholemount_strong.wlz

17630_wholemount_moderate.wlz

17630_wholemount_weak.wlz

17630_wholemount_possible.wlz

17630_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17630_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9523
Entity Detected:	Slc37a4, solute carrier family 37 (glucose-6-phosphate transporter), member 4 ( MGI:1316650)
Sequence:	sense strand is shown >T9523 AGACTTGGGAAAGGAGGGAAGGGCAAGCAGTCCTGGGGACCCTCTCCTCCCCCGGTTTGGCTCTCAGTAA CCTGTTTTCTTGTCTCTCTCAGGACACTGGGTTCCCTGGTTGCTGCCCCAGGCTTAATGATTGTCCAGAA GGCGGCTATAAAGAGCCTGGGTGGAGGAGAGAGAAAGCGCACAGAAAAACACAGCTCAGCAGATCCAGGC ACTAAAGAGAGCTAGCTGCAAGCAGGAGCAGTCAAGAATCTGTGGTCAGAAGTACTGGAGTGGGCCAGCA GGGCCAGCTTTTTCTACCATGGCAGCCCAAGGCTACGGCTACTATCGCACTGTCATATTTGCGGCCATGT TTGGAGGCTACAGCCTGTACTATTTCAACCGCAAAACCTTCTCCTTTGTCATGCCCTCCTTGGTGGATGA GATCGCTCTGGACAAGGACGATTTGGGGCTCATCACAAGCAGCCAGTCGGCAGCCTACGCCATCAGCAAG TTTGTGAGCGGGGTTCTGTCAGATCAGATGAGCGCCCGCTGGCTCTTCTCCTCTGGGCTGCTCCTGGTTG GTCTGGTCAACGTAGTCTTCTCATGGAGCTCCACAGTGTCAGCCTTTGCTGCTCTTTGGTTTCTTAATGG TCTGGCACAGGGGCTGGGCTGGCCCCCCTGTGGGAAGATCCTGAGGAAGTGGTTTGAGCCATCCCAGTTT GGCACTTGGTGGGCTGTGTTGTCAACCAGCATGAACCTGGCTGGAAGTTTGGGACCTATCTTGGCAACGA TCCTCGCCCAGAGCTACAGCTGGCGCAGCACACTGGCCCTGTCTGGGGCACTGTGTGTGGTTGTCTCCTT CTTCTGTCTGCTGCTTATCCACAATGAACCTGCTGATGTTGGACTCCGAAATCTGGACCCTGCCCCCTCC AAGGGCAAAAAGGGCTCATCAAAGGAGGAGAGCACCCTACAGGATCTGCTGCTGTCCCCCTATCTCTGGG TGCTGTCCACTGGCTACCTCGTGGTCTTCGGAGTAAAGACTTGCTGTACAGACTGGGGCCAGTTCTTCCT TATCCAGGAGCGAGGGCAGTCCGCCCTTGTGGGTAGCTCCTACATCAGTGCCCTCGAGGTCGGAGGCCTT GTAGGAAGCATTGCAGCTGGTTACCTGTCAGACAGGGCCATGGCGAAGGCAGGGCTGTCTCTGTATGGGA ACCCTCGTCACGGCCTATTGCTACTCATGATGGCTGGGATGGCAGCATCCATGTTCCTCTTCCGAGTAAC GGTGACCAGTGACTCACCCAAGATCTGGATCCTGGTTTTAGGAGCCGTGTTTGGTTTCTCTTCTTATGGT CCCATTGCCTTGTTTGGAGTCATAGCCAATGAGAGTGCACCTCCCAACTTGTGTGGAACCTCTCATGCTA TTGTGGGACTTATGGCCAATGTGGGTGGATTTCTGGCTGGCTTACCCTTCAGCACCATTGCCAAGCACTA TAGCTGGAGCACAGCCTTCTGGGTGGCAGAAGTGGTTTGTGGAGCCAGCACAGTTGTCTTCTTCTTGCTT CGAAATATCCGCACCAAGATGGGCCGAGTATCCAAGAAGGGAGAGTGAATCGAGTCCTCGCTATGGAGCA TCCCCAACTGCAGCCTTACTGGCAGGACACGGAAAGGAGAGCGGCTGCTCTGGCTAACACAGAACCTTTA CGTTTCTGTGTCTCCACTGTCTCTCTGAACCTCCATGGTGCTGCAAGTTACCAGTGGCTAATGAGGTCCC GACTCCCATCCCATGCTCTATTTAAAATGATGATGTTTGGTTCTAGACTCCATCAGCTTCTGTTTCTACC TTCTGGCAGACAGGCAACTCCTGAATTCAGAGTGTCTCCTATACCCTTCTTCTTCTCCTAGGTCCTGATC TCCTAGTGAGTATTAATGGCCTGTGGTTTCTGCTGTACCCCAAGGCTTCTTGGCAGGGGGCAAAATTGTT GCCAATACCTCAGTCCCTAAGGGAGGAGAGGAGTCCACCACTCTCATGAATACCCTGGGACAAAAGGGAA GAATATAGAGGGCAAACCGACTTGTATAGATCAATAAAGCTAGATTTGATACTAAAAAAAAAAAAAAAAA AAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30542293 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30542293 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17632 same embryo
	EMAGE:17627 same embryo
	EMAGE:17631 same embryo
	EMAGE:17629 same embryo
	EMAGE:17628 same embryo
	EurExpress:euxassay_005966 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source