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EMAGE:17635

Ctsc cathepsin C ( MGI:109553)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635
"Pseudo-wholemount" of euxassay_005970. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005970_01 euxassay_005970_02 euxassay_005970_03 euxassay_005970_04
EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635
euxassay_005970_05 euxassay_005970_06 euxassay_005970_07 euxassay_005970_08 euxassay_005970_09
EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635
euxassay_005970_10 euxassay_005970_11 euxassay_005970_12 euxassay_005970_13 euxassay_005970_14
EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635 EMAGE:17635
euxassay_005970_15 euxassay_005970_16 euxassay_005970_17 euxassay_005970_18 euxassay_005970_19
EMAGE:17635
euxassay_005970_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17635Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17635_wholemount_strong.wlz
17635_wholemount_moderate.wlz
17635_wholemount_weak.wlz
17635_wholemount_possible.wlz
17635_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17635_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9529
Entity Detected:Ctsc, cathepsin C ( MGI:109553)
Sequence:sense strand is shown

>T9529
TGAACTTGCTTTCTCTGCCATCTGCTCCGCGGGCGCCGTCAGCATGGGTCCCTGGACCCACTCCTTGCGC
GCCGTCCTGCTGCTGGTGCTTTTGGGAGTCTGCACCGTGCGCTCCGACACTCCTGCCAACTGCACCTACC
CTGATCTGCTGGGCACCTGGGTGTTCCAGGTGGGCCCTAGAAGTTCCCGAAGCGACATTAACTGCTCGGT
GATGGAAGCAACAGAAGAAAAGGTAGTGGTACACCTTAAGAAGTTGGATACTGCCTACGACGAGCTGGGC
AATTCCGGGCATTTTACCCTCATTTACAACCAAGGCTTCGAGATTGTGTTGAATGACTACAAATGGTTTG
CGTTTTTCAAGTATGAAGTCAGAGGCCACACAGCTATCAGTTACTGCCATGAGACCATGACTGGGTGGGT
CCATGATGTGCTGGGCCGGAACTGGGCTTGCTTTGTTGGCAAGAAGGTGGAAAGTCACATTGAGAAGGTT
AATATGAATGCAGCACATCTTGGAGGTCTCCAGGAAAGATATTCTGAAAGACTCTACACTCACAACCACA
ACTTTGTGAAGGCCATCAATACCGTTCAGAAGTCTTGGACTGCAACTGCATATAAGGAATATGAGAAAAT
GAGCCTGCGAGATCTGATAAGGAGAAGTGGCCACAGCCAAAGGATCCCAAGGCCCAAACCTGCCCCGATG
ACTGATGAAATACAGCAACAAATTTTAAATTTGCCAGAATCTTGGGACTGGAGAAACGTCCAAGGCGTCA
ATTATGTTAGCCCTGTTCGAAACCAAGAATCTTGTGGAAGCTGCTACTCATTTGCCTCTATGGGTATGCT
AGAAGCAAGAATTCGTATATTAACCAACAATTCTCAGACACCAATCCTGAGTCCTCAGGAGGTTGTATCT
TGCAGCCCCTATGCCCAAGGTTGTGATGGTGGATTCCCATACCTCATTGCAGGGAAGTATGCCCAAGATT
TTGGGGTGGTGGAAGAAAGCTGCTTTCCCTACACAGCCAAAGATTCTCCATGCAAACCAAGGGAGAATTG
CCTCCGTTACTATTCTTCTGACTACTACTATGTGGGTGGTTTCTATGGTGGCTGCAATGAAGCCCTGATG
AAGCTTGAGCTGGTCAAACATGGACCCATGGCAGTTGCCTTTGAAGTCCACGATGACTTCCTACACTACC
ACAGTGGAATCTATCACCACACTGGGCTGAGTGACCCTTTCAACCCCTTCGAGCTGACAAATCATGCTGT
TTTGCTTGTGGGCTATGGAAGAGATCCAGTTACTGGGATAGAATACTGGATTATAAAGAACAGCTGGGGC
TCTAACTGGGGGGAGAGTGGCTACTTCCGTATCCGCAGAGGAACTGATGAATGTGCAATTGAGAGTATAG
CCGTGGCGGCCATACCGATTCCTAAATTATAGGACATAGCTCCCAGTGTTACATACGGGTCTTTATCACT
CACAGAGTGATTTAGTCACATGCTGAAGACTTTTTCAGAGCAATATCAGAAGCTTACCACTAAGCATCTT
TAAAGAATTTTGTCTTTGAACTTAAAACCATCCTTGATTTTTTTCTTTTAATATCTTCCCCATCAACTAC
TGAACTACCTTTCTTTTTAAAGTACTTGGTTAAGTAATACTTTTATGAGCAGTGGTTCAGTTGTCCAATA
TTTTTTGCAGGTCATCTACAATGCAACCAGATGTTTCAGTTCTAAAAATCTATGTAAAAGTACAAGCTCG
TTTTTAAATTATGTAAGTCACATGAAAACATGGCAAAAAAATTAGTTAAATTTTTTACAAAGAGTTTTAA
ATAAATGTTTATGTAATCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30541061 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30541061 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17637 same embryo
 EMAGE:17638 same embryo
 EMAGE:17633 same embryo
 EMAGE:17634 same embryo
 EMAGE:17636 same embryo
 EurExpress:euxassay_005970 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS