EMAGE mouse gene expression spatial database

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EMAGE:17636

Uros uroporphyrinogen III synthase ( MGI:98917)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005977. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005977_01	euxassay_005977_02	euxassay_005977_03	euxassay_005977_04

euxassay_005977_05	euxassay_005977_06	euxassay_005977_07	euxassay_005977_08	euxassay_005977_09

euxassay_005977_10	euxassay_005977_11	euxassay_005977_12	euxassay_005977_13	euxassay_005977_14

euxassay_005977_15	euxassay_005977_16	euxassay_005977_17	euxassay_005977_18	euxassay_005977_19

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17636_wholemount_strong.wlz

17636_wholemount_moderate.wlz

17636_wholemount_weak.wlz

17636_wholemount_possible.wlz

17636_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17636_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

liver

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9535
Entity Detected:	Uros, uroporphyrinogen III synthase ( MGI:98917)
Sequence:	sense strand is shown >T9535 GTTCCTTCCGCCGGCGCCTGGACGCCCCTGTGCGAGCACAGCCAGATGTGGGTCAGTGGCCTCGGATCCT CGGGTCTGAGGAACAGTCTGAGATCTAAGTAAGATCCATTTCCTCGCTCTGCCGCAGCAGCGTCTTTTAG AAGGACTGCCAGGCACAATGAAGGTTCTCTTACTAAAAGACGCCAAGGAGGATGACAGCGGCCTGGATCC ATATATCCAGGAGCTGCGATTGTGTGGCCTAGAAGCCACACTGATTCCTGTGCTGTCATTTGAGTTTATG TCTCTCCCCAGTTTGTCAGAAAAGCTGTCTCATCCTGAAGGCTTTGGAGGACTCATTTTCACCAGCCCCA GGGCAGTGGAAGCAGTGAAGCTGTGTTTGGAGAAGGACAATAAAACTGAAGCCTGGGAGAAGTCTCTGAA AGACAGATGGAATGCCAAGTCTGTGTACGTGGTTGGAAGTGCCACCGCTTCTCTAGTGAATAAAATTGGT CTGGATGCAGAAGGAGCGGGCAGTGGAAATGCAGAAAAGCTTGCTGAATATATTTGCTCAAAGCCATCTT CAGAGCTGCCTCTTCTCTTTCCGTGTGGAACTATCAAAGGAGATACTCTTCCAAAAATGCTCAAGGACAA AGGGATCCCCATGGAAAGCATGCATGTCTATCAGACAGTTCCACACCCTGGGATCCAAGGGAGCCTGAAG AGCTACTATGAAGATCAGGGTATCCCAGCCAGCATCACGTTTTTCAGTCCCTCCGGCCTTAAATACAGCC TCGAGTATATTCAGGCGTTATCTGGCAGCAGCTTTGACCAGATTAAGTTTATAGCCATTGGCCCCAGTAC AACCCGTGCTATGGCTGCTAAGGGCCTGCCTGTGAGCTGCACTGCAGAGAGCCCCACACCACAAGCCCTG GCTGCAGGCATCAGGAATGTGCTGAAGCCAAACCACTGTTGCTGAGGGCTGTGCAGAGCCAGCTCCTTCC CTGTGCACGGGACAGCTCACTGCCTCTAGGATGGAACGCAGATTCGGAGAGATCTGGAGAAGCTGCCTGT GAGCATGTCACCGTCCTCCATGGAGTCCAGCTTGGAGCCTACGCCAGGTTCACTGGCCATTAGGTCACTG CCATTCGACACAGGGGGAGAGAAAGCTTCCTGGGTCTAGAAAGAAGGAACTGAAATCGACCATGTGGTGA CTTGTGCCCACTCTTTTACAAACTGTATTTCTTTTATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30358504 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30358504 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17637 same embryo
	EMAGE:17635 same embryo
	EMAGE:17638 same embryo
	EMAGE:17633 same embryo
	EMAGE:17634 same embryo
	EurExpress:euxassay_005977 same experiment
	MGI:4829122 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source