Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17637

Ltv1 LTV1 homolog (S. cerevisiae) ( MGI:2447810)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637
"Pseudo-wholemount" of euxassay_005967. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005967_01 euxassay_005967_02 euxassay_005967_03 euxassay_005967_04
EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637
euxassay_005967_05 euxassay_005967_06 euxassay_005967_07 euxassay_005967_08 euxassay_005967_09
EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637
euxassay_005967_10 euxassay_005967_11 euxassay_005967_12 euxassay_005967_13 euxassay_005967_14
EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637 EMAGE:17637
euxassay_005967_15 euxassay_005967_16 euxassay_005967_17 euxassay_005967_18 euxassay_005967_19
EMAGE:17637
euxassay_005967_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17637Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17637_wholemount_strong.wlz
17637_wholemount_moderate.wlz
17637_wholemount_weak.wlz
17637_wholemount_possible.wlz
17637_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17637_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
rib
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 12 13 14 15 16 17 18
forelimb digit 3
strong strong
regionalstrong expression: see section 01 02
hindlimb digit 2
strong strong
regionalstrong expression: see section 05 06
hindlimb digit 3
strong strong
regionalstrong expression: see section 06
fibula
strong strong
regionalstrong expression: see section 01 02 03 04
tibia
strong strong
regionalstrong expression: see section 01 02 03 04
femur
strong strong
regionalstrong expression: see section 01 02 03 04
naris
strong strong
regionalstrong expression: see section 11 12 13 14 15 16
nasal septum
strong strong
regionalstrong expression: see section 13 14
viscerocranium
strong strong
regionalExpression in the turbinate bone.
vomeronasal organ
strong strong
regionalstrong expression: see section 18
axial skeleton
strong strong
regionalstrong expression: see section 01 02 03 04 06 07 08 09 10 11
axial skeleton cervical region
strong strong
regionalstrong expression: see section 05
basioccipital bone
strong strong
regionalstrong expression: see section 15 16 not examined expression: see section 14
basisphenoid bone
strong strong
regionalstrong expression: see section 10 11 12 13
exoccipital bone
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 11 12 13 14 15 16 17 18 19 20 moderate expression: see section 10
temporal bone petrous part
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 14 15 16 17 18 19 20
frontal bone primordium
strong strong
regionalstrong expression: see section 01 02 03 18
parietal bone
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 09 10
temporal bone
strong strong
regionalstrong expression: see section 18
orbito-sphenoid
strong strong
regionalstrong expression: see section 01 02 03 04 05 06 07 08 18 19 20
clavicle
strong strong
regionalstrong expression: see section 06 13
sternum
strong strong
regionalstrong expression: see section 10 11
axial skeleton tail region
strong strong
regionalstrong expression: see section 11 12 13 14
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9531
Entity Detected:Ltv1, LTV1 homolog (S. cerevisiae) ( MGI:2447810)
Sequence:sense strand is shown

>T9531
GTGACGTGCTGCCCTAGCCCTGTGGACCCACGTGTGGAGCTGCCGGCAGGTACCGGGGAGCGGCGGTTCG
GCTGCCGCGGTTCCGGAGAGGGTGTCCCTGCCTCATCATGCCTCACAGAAAGAAAAAGCCCTTTATAGAG
AAGAAGAAAGCTGTGTCTTTTCACCTGGTCCACCGGAGCCAGCGAGATCCTTTAGCCGCAGATGAAACTG
CACCCCAGAGGGTTCTCTTGCCTACACAAAAGGTCAATGACGAGGAAAGACGGGCTGAGCAGAGGAAGTA
CGGCGTGTTCTTCGACGACGATTATGATTACTTGCAGCACCTGAAGGAGCCCTCTGGGCCCGCAGAGCTT
ATCCCCAGCACCTCCTTTGCCACACCCCTCTGCGACAAGACAGAAGACCCCTGCGTATACTCAAGCACTG
GAATTAAGTTGCCTTCATCTGTGTTTGCATCCGAGTTTGAGGAAGATGTTGGATTGTTAAACAAAGCAGC
TCCAGTTTCAGGACCTCGACTGGATTTTGATCCAGACATCGTTGCAGCTCTTGATGATGATTTTGACTTT
GATGACCCAGAAAACCTCCTTGAAGATGACTTTATTCTTCAGGCCAACAAGCCGACAGGAGGAGAGAGGA
TGGATACGGAGTCTGAGGAAGACGATGGCCATGAGTGGGAAGACATGGACGACGAGGAAGGGAGTGATGA
CAGGAGCTCTGCAGGCTTTCTGTCAGATGGAGGTGACCTATCTGCCCCCGGCTCACCGCAGGAAGCCATG
AAAAAGCACCTGTTTTGGGAAGAGGAAACCAAAAGCCGTTTCACAGAGTACTCCATGACCTCCTCAGTCA
TGAGGAGAAATGAACAGCTGACTCTACACGATGAGAGGTTTGAGAAGTTTTATGAACAGTATGATGATGT
TGAAATTGGAGCTCTGGATAATGCAGAATTGGAAGGTACCATTCAAGTGGACAGCAATCGGCTGCAGGAG
GTTTTGAATGACTACTACAAGGAGAAGGCAGAGAATTGTGTAAAATTGAGTACTCTTGAGCCTTTTGAGG
ATCAAGATCTGCCAACAAATGAGCTTGATGAGTCTGAAAAGGAAGAGACCATTACTGTAGTTCTTGAGGA
AGCCAAAGAGAAGTGGGATTGTGAATCCATTTGCAGTACATACTCCAATTTATACAACCACCCACAGCTC
ATCAAATATGAACCAAAGCCCAAACAAATCCACCTGTCGTCTAAGACCGGAATACCTCTCAATGTCTTAC
CTAAGAAAGGCCTCACAGCAAAGCAGGTTGAACGGATGCAGATGATCAATGGCAGTGACCTACCCAAAGT
GTCCACCCAGCCTCGTTCCAAAGATGAGACCAAAGAGGATAAAAGAGCCAGGAAGCAAGCCATAAAAGAG
GAGCGGAAGGAACGAAGAGTTGAAAAGAAAGCTAACAAGCTAGCATTTAAACTGGAGAAAAGAAGACAAG
AAAAGGAGCTACTGAACTTGAAGAAAAACATTGAAGGTCTAAAGCTGTAGGTGTGGGACATTCATATAAG
TTATATTTCCATGTCAGCAGTCTTAGTTATGCTCTGTAATTAACCAGGATCTGAAGAGGGGTGAGCTTGC
CCCTGCCATTTTTATATGCAAATAGCTGAGAAAAATAGACTATTTGTATTTTCATACAAGCGGTTCTCCT
GTCAGCTAACTTGTAAATACTATAATGTTGTAAGTTTAATATTACACGCTTATATTTCCCCTGAAATAAA
TGATTTCATGAAAGTCAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30538957 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30538957 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17635 same embryo
 EMAGE:17638 same embryo
 EMAGE:17633 same embryo
 EMAGE:17634 same embryo
 EMAGE:17636 same embryo
 EurExpress:euxassay_005967 same experiment
 MGI:4826022 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS