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EMAGE:18259

Hip1r huntingtin interacting protein 1 related ( MGI:1352504)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259
"Pseudo-wholemount" of euxassay_012046. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012046_01 euxassay_012046_02 euxassay_012046_03 euxassay_012046_04
EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259
euxassay_012046_05 euxassay_012046_06 euxassay_012046_07 euxassay_012046_08 euxassay_012046_09
EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259
euxassay_012046_10 euxassay_012046_11 euxassay_012046_12 euxassay_012046_13 euxassay_012046_14
EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259
euxassay_012046_15 euxassay_012046_16 euxassay_012046_17 euxassay_012046_18 euxassay_012046_19
EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259 EMAGE:18259
euxassay_012046_20 euxassay_012046_21 euxassay_012046_22 euxassay_012046_23 euxassay_012046_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:18259Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
18259_wholemount_strong.wlz
18259_wholemount_moderate.wlz
18259_wholemount_weak.wlz
18259_wholemount_possible.wlz
18259_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:18259_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
rib
moderate moderate
regionalmoderate expression: see section 08 09 10 11 14 15 20 weak expression: see section 07 16 17 18 19
hindlimb digit 1 metatarsal
moderate moderate
regionalmoderate expression: see section 22
hindlimb digit 2 metatarsal
moderate moderate
regionalmoderate expression: see section 04 22 23
hindlimb digit 3 metatarsal
moderate moderate
regionalmoderate expression: see section 04 22 23
hindlimb digit 4 metatarsal
moderate moderate
regionalmoderate expression: see section 22 23
hindlimb digit 5 metatarsal
moderate moderate
regionalmoderate expression: see section 22
tarsus
moderate moderate
regionalmoderate expression: see section 04 05 23 24
fibula
moderate moderate
regionalmoderate expression: see section 02
tibia
moderate moderate
regionalmoderate expression: see section 01 02 weak expression: see section 03
thymus primordium
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 06 07 08 09 16 17 18 19
pancreas
strong strong
regionalstrong expression: see section 07 08 09 10 11 12 13 14 15 16 17
thyroid gland
weak weak
regionalweak expression: see section 11 15
pituitary gland
moderate moderate
regionalmoderate expression: see section 10 11 12 13 14 15
epidermis
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
vibrissa
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 19 20 21 22 23
diencephalon lateral wall mantle layer
moderate moderate
homogeneousmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
telencephalon mantle layer
moderate moderate
homogeneousmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
rest of cerebellum mantle layer
moderate moderate
homogeneousmoderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21
pons mantle layer
moderate moderate
homogeneousmoderate expression: see section 07 08 09 10 11 12 13 14 15 16 17 18 19
midbrain mantle layer
moderate moderate
homogeneousmoderate expression: see section 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20
facial vii ganglion
moderate moderate
regionalmoderate expression: see section 04 05 20 21
glossopharyngeal ix ganglion
moderate moderate
regionalmoderate expression: see section 07 18 weak expression: see section 06
trigeminal v ganglion
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 08 09 17 18 19 20 21 22
spinal cord mantle layer
moderate moderate
homogeneousmoderate expression: see section 08 09 10 11 12 13 14 15 16 17
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 16 17 18
pharyngo-tympanic tube
moderate moderate
regionalmoderate expression: see section 23 24 weak expression: see section 01 02 03 04 21 22
cornea epithelium
moderate moderate
regionalmoderate expression: see section 01 02 03 04 23 24
neural retina
strong strong
regionalstrong expression: see section 01 02 03 23 24
naris
moderate moderate
regionalmoderate expression: see section 11 12 14 15
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 10 11 12 15 16
esophagus
moderate moderate
regionalmoderate expression: see section 12 13
stomach
strong strong
regionalstrong expression: see section 04 05 06 07 08 09 10
rectum
strong strong
regionalstrong expression: see section 13 14
midgut
strong strong
regionalstrong expression: see section 13 14 15 16 17 18
lower jaw incisor
strong strong
regionalstrong expression: see section 13 moderate expression: see section 10 11 12 14 15 16
lower jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 18 19
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 11 12 15 16
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 19
liver lobe
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
bladder
strong strong
regionalExpression in the fundus region.
metanephros
moderate moderate
regionalmoderate expression: see section 07 08 09 10 11 19 20 weak expression: see section 17 18 21
urethra of male
strong strong
regionalstrong expression: see section 13
larynx
moderate moderate
regionalmoderate expression: see section 12 13
trachea
moderate moderate
regionalmoderate expression: see section 13 weak expression: see section 12
basisphenoid bone
moderate moderate
regionalmoderate expression: see section 24
exoccipital bone
moderate moderate
regionalmoderate expression: see section 01 02 03 04 19 20 21 22 23 24 weak expression: see section 05
temporal bone
moderate moderate
regionalmoderate expression: see section 21
temporal bone petrous part
moderate moderate
regionalmoderate expression: see section 01 02 03 04 22 23 24
orbito-sphenoid
moderate moderate
regionalmoderate expression: see section 01 02 08 18 19 20 21 23 24 weak expression: see section 06 07
viscerocranium
moderate moderate
regionalExpression in the turbinate bone.
clavicle
strong strong
regionalstrong expression: see section 09 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9511
Entity Detected:Hip1r, huntingtin interacting protein 1 related ( MGI:1352504)
Sequence:sense strand is shown

>T9511
CTGGCGGGAGGGGCTGCGGCTCCTCCCCGTGCGGCGCGGCGCGCGGCCTCCGTGTGCCTAGGCTTGAGGC
GGGCGGTGACGCCTCATTCGCGCGGAGCCGGGCCGGGACACGGTCGGCGGCAGCATGAACAGCATCAAGA
ATGTGCCGGCGCGGGTGCTGAGCCGCAGGCCGGGCCACAGCCTAGAGGCCGAGCGCGAGCAGTTCGACAA
GACGCAGGCCATCAGTATCAGCAAAGCCATCAACAGCCAGGAGGCCCCAGTGAAGGAGAAGCATGCCCGG
CGTATCATCCTGGGCACGCATCATGAGAAGGGAGCCTTTACCTTCTGGTCCTATGCCATCGGCCTGCCGC
TGTCCAGCAGCTCCATCCTCAGCTGGAAGTTCTGTCACGTCCTTCACAAGGTCCTCCGGGACGGACACCC
CAACGTCCTGCATGACTATCAGCGGTACCGGAGCAACATACGTGAGATCGGTGACTTGTGGGGCCACCTT
CGTGACCAGTATGGACACCTGGTGAATATCTATACCAAACTGTTGCTGACTAAGATCTCCTTCCACCTTA
AGCATCCCCAGTTTCCTGCAGGCCTGGAGGTAACAGATGAGGTGTTGGAGAAGGCGGCGGGAACTGATGT
CAACAACATTTTTCAGCTTACCGTGGAGATGTTTGACTACATGGACTGTGAACTGAAGCTTTCTGAGTCA
GTTTTCCGGCAGCTCAACACGGCCATCGCAGTGTCCCAGATGTCTTCTGGCCAGTGTCGCCTAGCGCCGC
TCATCCAGGTCATTCAGGACTGCAGCCACCTGTACCACTACACAGTGAAGCTCATGTTTAAGCTGCACTC
CTGTCTCCCGGCAGACACCCTGCAAGGCCACAGGGATCGGTTCCACGAGCAGTTTCACAGCCTCAAAAAC
TTCTTCCGCCGAGCTTCAGACATGCTGTACTTCAAGAGGCTCATCCAGATCCCGCGGCTGCCTGAGGGAC
CCCCCAATTTCCTGCGGGCTTCAGCCCTGGCTGAGCACATCAAGCCGGTGGTGGTGATTCCCGAGGAGGC
CCCAGAGGAAGAGGAGCCTGAGAACCTAATTGAAATCAGCAGTGCACCCCCTGCTGGGGAGCCAGTGGTG
GTGGCTGACCTCTTTGATCAGACCTTTGGACCCCCCAATGGCTCCATGAAGGATGACAGGGACCTCCAAA
TCGAGAACTTGAAGAGAGAGGTGGAGACCCTCCGTGCTGAGCTGGAGAAGATTAAGATGGAGGCACAGCG
GTACATCTCCCAGCTGAAGGGCCAGGTGAATGGCCTGGAGGCAGAGCTGGAGGAGCAGCGCAAGCAGAAG
CAGAAGGCCCTGGTGGACAACGAGCAGCTGCGCCACGAGCTGGCCCAGCTCAAGGCCCTGCAGCTGGAGG
GCGCCCGCAACCAGGGCCTTCGAGAGGAAGCAGAGAGGAAGGCCAGTGCCACGGAGGCACGCTACAGCAA
GCTGAAGGAGAAACACAGCGAACTCATTAACACCCACGCCGAGCTGCTCAGGAAGAACGCAGACACGGCC
AAGCAGCTGACAGTGACACAGCAGAGCCAGGAGGAGGTGGCACGGGTAAAGGAACAGCTGGCCTTCCAGA
TGGAGCAAGCGAAGCGTGAGTCTGAGATGAAGATGGAAGAGCAGAGCGACCAGTTGGAGAAGCTCAAGAG
GGAGCTGGCGGCCAGGGCAGGAGAGCTGGCCCGTGCGCAGGAGGCCCTGAGCCGCACAGAACAGAGTGGG
TCAGAGCTGAGCTCACGGCTGGACACACTGAATGCGGAGAAGGAAGCTCTGAGTGGAGTCGTTCGGCAGC
GTGAGGCAGAGCTGCTGGCCGCTCAGAGCCTGGTGCGGGAGAAGGAGGAGGCACTTAGCCAAGAGCAGCA
GCGGAGCTCCCAGGAGAAGGGCGAGCTACGGGGGCAGCTGGCAGAAAAGGAGTCTCAGGAGCAGGGGCTT
CGGCAGAAGCTGCTGGATGAGCAGTTGGCGGTGTTGCGAAGTGCAGCCGCCGAGGCAGAGGCCATCCTAC
AGGATGCAGTGAGCAAGCTGGACGACCCCCTGCACCTCCGCTGCACCAGCTCCCCAGACTACTTGGTGAG
CCGGGCTCAGGCAGCCCTGGACAGCGTGAGCGGCCTGGAGCAGGGCCACACCCAGTACCTGGCTTCCTCT
GAAGATGCTTCTGCCCTGGTGGCAGCGCTGACCCGCTTCTCCCATTTGGCTGCGGACACCATTGTCAATG
GTGCCGCCACCTCCCACCTGGCCCCCACCGACCCCGCCGACCGCCTGATGGACACATGCAGGGAGTGTGG
AGCCCGGGCTCTGGAGCTGGTGGGACAGCTGCAAGACCAGACAGTGCTACCGAGGGCTCAGCCCAGCCTG
ATGCGGGCCCCCCTGCAGGGCATTCTGCAGTTGGGCCAGGACTTGAAGCCTAAGAGCCTGGATGTACGGC
AAGAGGAGCTAGGGGCCATGGTGGACAAGGAGATGGCGGCCACCTCGGCAGCCATTGAGGACGCTGTGCG
GAGGATCGAGGACATGATGAGCCAGGCCCGCCACGAGAGCTCGGGCGTGAAACTGGAGGTGAATGAGAGG
ATCCTCAACTCCTGCACAGACCTGATGAAGGCTATCCGGCTCCTGGTGATGACCTCCACCAGCCTGCAGA
AGGAAATTGTGGAGAGCGGCAGGGGGGCAGCAACGCAGCAGGAATTTTATGCCAAGAATTCACGGTGGAC
TGAAGGCCTCATCTCAGCCTCTAAGGCAGTGGGCTGGGGAGCCACACAGCTGGTGGAGTCAGCTGACAAG
GTTGTGCTTCACATGGGCAAATACGAGGAACTCATCGTCTGCTCCCATGAGATTGCGGCCAGCACGGCCC
AGCTGGTGGCAGCCTCGAAGGTGAAAGCCAACAAGAACAGTCCCCACTTGAGCCGCCTGCAGGAATGTTC
CCGCACTGTCAACGAGAGGGCTGCCTACGTCGTGGCCTCCACCAAATCTGGCCAGGAGCAGATTGAGGAC
AGAGACACCATGGATTTCTCTGGCCTGTCCCTCATCAAGTTGAAGAAGCAGGAGATGGAGACACAGGTGC
GAGTCTTGGAGCTGGAGAAGACACTAGAGGCAGAGCGTGTCCGGCTCGGGGAGCTTCGGAAACAGCACTA
TGTACTGGCTGGGGGGATGGGAACACCTAGCGAAGAAGAACCCAGCAGACCCAGCCCAGCTCCCCGAAGT
GGGGCCACTAAGAAGCCACCGCTGGCCCAGAAACCCAGCATAGCCCCCAGGACAGACAACCAGCTCGACA
AAAAGGATGGTGTCTACCCAGCTCAACTTGTGAACTACTAGGCCCCTAAGGTGTTCAGCAGGATGGTTGG
TGGTTGTGCCTGGGCTTCACGTGGCTGTCTGGCAGTGGTCAAGGGGCCTCTGAGAAGCCTCCAACTCCTG
TCCAAGGGGCCTAGTCTGTGGGACAGTTCATCTGGATGTGAATCTATTTATCTTAAGTAGGAACTGCCTC
GAGCAGCTGGGACCCAGCAGGCCTGAGCCACAAATCTGCAGCGGACATCAGAGATAGTCTGAATGCTGCG
AGGTATTTCTTTCTTCGTAAGTTTAGTCAGCACACTGGGAAAAGGTCACATAAGCCAGGAGCCTCCTTGT
CTCTGGACTTAAAAGTCTGAGGCCTTAAGTGAACAACAGAAAGAGGGTCCCTGCTGGCTACCAGGGATAA
GGGGATGACCTGTGACCCTTGAGCCAGGGAGAGCAGGTAAGCTGGGTAGTGTCATCACCTGGGGGCCTGG
TGCTAGGGCATCCATGCTGGGAGCCCCAGGAGACCAGGCTTTGTGTGGGAGCCTGGCATCATCGTGGCTG
GGGCAGCCCCTGCTCAGGTGCTGCCTCTGCCCGTGACCTCGAAGCCACCCTCCCCCGTACAGTTTTCCAT
TCTCCTGGCTACTAGTGTGGCTGTTCATTGCCTACCTTGATGAGTAGATTTCAGCCCTCCTAAAGCTGGG
GCCTTTCAGCCAGACAAAAGCTATTAAAAAAAAAAGAGCAGATGCCATAGCCCACATTTCTGGAGGCTCA
AGAGTTCTTGCTGGAGCAGCCCAGACATGGAGGGCTGGCCTTGCCTGCCCCTGACAGTTTGAATAAATTT
GTGTGTCTTGAGCCTGAGGAGGAGTGGCTGGGGGTAGAAGATATCCAGGCCACCAATAAAGCCAGCAGCT
GGTCTGGGACAAGTGCCCAGCCTCCCTCCAGCTGCATGCCCTGCACCCTGGGAAGGCTACCAACCATGGA
CCAAGGTCCGGGGCTTTGGGAGGGAGCCGGCTCCTTTGCTCTGTCTAGTGTTCCCTGTGTTGAGTTCCAT
TGGCAATAAAACCCTGACTGTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
Notes:The probe template was PCR amplified from IMAGE:30535741 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30535741 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18262 same embryo
 EMAGE:18263 same embryo
 EMAGE:18258 same embryo
 EMAGE:18260 same embryo
 EMAGE:18261 same embryo
 EurExpress:euxassay_012046 same experiment
 MGI:4825372 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS