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EMAGE:19390

Vapa vesicle-associated membrane protein, associated protein A ( MGI:1353561)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390
"Pseudo-wholemount" of euxassay_004811. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004811_01 euxassay_004811_02 euxassay_004811_03 euxassay_004811_04
EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390
euxassay_004811_05 euxassay_004811_06 euxassay_004811_07 euxassay_004811_08 euxassay_004811_09
EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390
euxassay_004811_10 euxassay_004811_11 euxassay_004811_12 euxassay_004811_13 euxassay_004811_14
EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390
euxassay_004811_15 euxassay_004811_16 euxassay_004811_17 euxassay_004811_18 euxassay_004811_19
EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390 EMAGE:19390
euxassay_004811_20 euxassay_004811_21 euxassay_004811_22 euxassay_004811_23 euxassay_004811_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19390Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19390_wholemount_strong.wlz
19390_wholemount_moderate.wlz
19390_wholemount_weak.wlz
19390_wholemount_possible.wlz
19390_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19390_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6054
Entity Detected:Vapa, vesicle-associated membrane protein, associated protein A ( MGI:1353561)
Sequence:sense strand is shown

>T6054
GGATCGCAGTGCGCGTGGCCGCGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGACACCCGGAGCTGCTGAG
CGGACAGGCTGCCCTCGGGACCCCCGCGGCCCGGCAGCAGGCGCGGAGCTTCGGGAATCGTGAGCCTGGC
CCCGTCCTAGAGCTCCGCGGAGCCGGCGCCGCCACCGTCCCCTCGCCCCCGCCAGCGAACCGCCGCCGCG
GGCGCGCCCCCGCTCTGCGCTGCGCTGTCTCCTATGGCGTCCGCCTCCGGGGCCATGGCGAAGCACGAGC
AGATCCTGGTCCTCGACCCTCCTTCAGACCTCAAATTCAAAGGCCCCTTCACAGATGTAGTCACTACAAA
TCTTAAATTGCAAAATCCATCGGATAGAAAAGTGTGTTTCAAAGTGAAGACTACAGCACCTCGCCGGTAC
TGTGTGCGGCCCAACAGTGGGATTATTGACCCGGGGTCAATTGTGACTGTTTCAGTAATGCTGCAACCCT
TTGATTATGATCCGAATGAAAAGAGTAAACATAAGTTCATGGTACAGACAATTTTTGCTCCACCAAACAT
TTCAGATATGGAAGCTGTGTGGAAAGAAGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGTG
TTTGAAATGCCGAATGAAAATGATAAGCTGAATGATATGGAACCTAGCAAAGCTGTTCCACTGAATGCAT
CCAAACAAGACGGACCCCTGCCAAAACCACACAGTGTTTCACTCAATGATACGGAAACAAGGAAACTGAT
GGAAGAGTGCAAGCGACTCCAGGGAGAAATGATGAAGCTCTCAGAAGAAAACCGACACCTGAGAGATGAA
GGCCTAAGGCTCAGAAAGGTAGCACATTCGGATAAACCTGGATCCACCTCAGCCGTGTCCTTCAGAGATA
ATGTCACCAGTCCTCTTCCTTCTCTTCTGGTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGGAA
ATTCATCTTGTAGAGTGAAGCATGCAGAGTGCTGTTTCTTTTTTTTTTTTTTTCTTCTCTCGACCAGAAA
AAGATTTGTTTACCTACCATTTCATTGGTAGTATGGCCCGCGGTGACCATGGCCCGCGGTGACCAATTTT
TTTTGTGTGTACAGCGTCATATAGGCTTTGCCTTTAATGATCTCTTACGGTTAGAAAACACAATAAAAAC
AAACTGTTCGGCTACTGGACAAATTGTATATTATCAGATCATCACTAGCAGATGTCAGTTGCACATTCAG
TCCTTTATGAAATTCATAAATAAAGAATTGTTCTTTCTTTGTGGTTTTAATAAGAGTTCAAGAATTGTTC
AGTCTTGTAAATGTTATTTTAATAATTCCTTTAAATTTTATCTGTTGCTGTTACCTCTTGAAATATGATT
TATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTTTTCTGTGGGGGAAATGGTGCCTCTT
ACTGTGTAAATTTTCTCCTTTACCTTTGCTAATATCATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGT
TTGTTGACTGAGTTTTTCATCCTTACAATCCTGTCCCATGGTATTTAACATAAAAAAAATAAAACTGTTA
ACAGATTCTTGCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3490082 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3490082 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19392 same embryo
 EMAGE:19394 same embryo
 EMAGE:19393 same embryo
 EMAGE:19389 same embryo
 EMAGE:19391 same embryo
 EurExpress:euxassay_004811 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS