EMAGE mouse gene expression spatial database

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EMAGE:19427

Uba3 ubiquitin-like modifier activating enzyme 3 ( MGI:1341217)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_004835. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_004835_01	euxassay_004835_02	euxassay_004835_03	euxassay_004835_04

euxassay_004835_05	euxassay_004835_06	euxassay_004835_07	euxassay_004835_08	euxassay_004835_09

euxassay_004835_10	euxassay_004835_11	euxassay_004835_12	euxassay_004835_13	euxassay_004835_14

euxassay_004835_15	euxassay_004835_16	euxassay_004835_17	euxassay_004835_18	euxassay_004835_19

euxassay_004835_20	euxassay_004835_21	euxassay_004835_22	euxassay_004835_23	euxassay_004835_24

euxassay_004835_25	euxassay_004835_26	euxassay_004835_27

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

19427_wholemount_strong.wlz

19427_wholemount_moderate.wlz

19427_wholemount_weak.wlz

19427_wholemount_possible.wlz

19427_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:19427_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6521
Entity Detected:	Uba3, ubiquitin-like modifier activating enzyme 3 ( MGI:1341217)
Sequence:	sense strand is shown >T6521 CGGATGGCGAGGAGCCGGAGAAGAAAAGAAGGAGAATAGAGGAGCTGCTGGCTGAGAAAATGGCTGTTGA TGGTGGGTGTGGGGACACTGGAGACTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCTCGAGCGGTCT GGACCCTTCACACACCCCGATTTCGAACCAAGCACTGAATCACTCCAGTTCTTGTTAGATACATGTAAAG TTCTAGTCATTGGAGCTGGTGGCTTAGGATGTGAGCTTCTGAAAAATCTGGCATTATCTGGTTTTAGACA GATTCATGTTATAGACATGGACACTATAGATGTTTCCAATTTAAATAGACAGTTTTTATTTAGGCCTAAA GATGTTGGAAGACCCAAGGCTGAAGTTGCTGCAGAATTCCTAAATGACAGAGTTCCTAACTGCAACGTGG TCCCACATTTCAACAAGATTCAAGATTTTAACGACACTTTCTACCGACAATTTCATATCATTGTATGTGG CCTGGACTCTATCATAGCGAGAAGATGGATCAATGGAATGCTGATATCTCTTCTAAATTATGAAGATGGT GTGTTGGATCCAAGCTCCATTGTACCTTTGATAGATGGGGGGACAGAAGGCTTTAAAGGGAATGCCCGAG TGATTTTGCCTGGAATGACCGCTTGTATTGAGTGCACTCTGGAACTTTACCCACCACAGGTCAATTTCCC CATGTGTACCATTGCATCTATGCCTAGGCTCCCAGAACACTGTATCGAGTATGTGAGGATGTTGCAATGG CCTAAAGAGCAGCCTTTTGGAGATGGGGTTCCATTAGATGGAGATGACCCTGAACATATTCAGTGGATTT TCCAAAAGTCCATAGAGAGAGCATCACAATATAATATTAGAGGCGTTACCTACAGACTCACTCAAGGGGT GGTAAAACGAATCATTCCTGCAGTAGCTTCTACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTT TTCAAGATAGCTACAAGTGCGTACATTCCCCTTAATAACTACCTGGTATTCAATGATGTAGATGGGCTGT ACACTTACACGTTTGAAGCAGAGAGAAAGGAAAACTGTCCAGCATGTAGCCAACTTCCTCAAAACATTCA GTTTTCCCCATCAGCTAAATTACAGGAGGTCTTAGACTACCTAACCAACAGTGCTTCTCTGCAAATGAAG TCTCCGGCTATCACAGCCACATTAGAGGGGAAGAACAGGACACTTTACTTACAGTCAGTAACGTCTATTG AAGAACGAACCAGGCCCAATCTTTCCAAAACATTAAAAGAACTGGGACTAGTTGATGGACAAGAACTGGC TGTTGCTGATGTCACTACACCACAGACTGTACTATTCAAACTTCATTTTACTTAAGGAAAATAAATCTGC ACATAATAGAAAATTCATAGAAATAATATACTTTATAAATGATATGAAATTGAAGAGCCTGGAAGATGAG GCAGAGGGGAACATCCAAGAAAGGAAATTTAATTGGTGTCATTTTTAGCATTAGTGTGGCTAGAATTTGA CTTTTATATATATACATATATATAAAAAAGGACTGACTCTTTTTTAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3590282 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3590282 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:19430 same embryo
	EMAGE:19425 same embryo
	EMAGE:19428 same embryo
	EMAGE:19429 same embryo
	EMAGE:19426 same embryo
	EurExpress:euxassay_004835 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source