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EMAGE:19552

Cldn6 claudin 6 ( MGI:1859284)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552
euxassay_004952_01 euxassay_004952_02 euxassay_004952_03 euxassay_004952_04 euxassay_004952_05
EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552
euxassay_004952_06 euxassay_004952_07 euxassay_004952_08 euxassay_004952_09 euxassay_004952_10
EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552
euxassay_004952_11 euxassay_004952_12 euxassay_004952_13 euxassay_004952_14 euxassay_004952_15
EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552 EMAGE:19552
euxassay_004952_16 euxassay_004952_17 euxassay_004952_18 euxassay_004952_19 euxassay_004952_20
EMAGE:19552 EMAGE:19552
euxassay_004952_21 euxassay_004952_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19552Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19552_wholemount_strong.wlz
19552_wholemount_moderate.wlz
19552_wholemount_weak.wlz
19552_wholemount_possible.wlz
19552_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19552_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
embryo
strong strong
ubiquitousstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8018
Entity Detected:Cldn6, claudin 6 ( MGI:1859284)
Sequence:sense strand is shown

>T8018
GGAAATCTTAGCAGTCTCTTTTGCAGGCTCGGATATCAGGGGTGGCCGAACCGGACTGGACGTCCGCAGA
CAAAGCTGACCGAGCACTCGCCCCCTCAACCTCATCATGGCCTCTACTGGTCTGCAAATCTTGGGGATCG
TCCTGACCCTGCTTGGCTGGGTCAACGCCCTGGTGTCCTGTGCCCTGCCCATGTGGAAGGTGACCGCCTT
CATCGGCAACAGCATCGTCGTGGCCCAGATGGTGTGGGAGGGGCTGTGGATGTCCTGTGTGGTTCAGAGC
ACTGGCCAGATGCAGTGCAAGGTGTATGACTCACTGTTGGCGCTGCCCCAGGACCTGCAGGCTGCCAGAG
CCCTCTGTGTTGTCACCCTCCTCATTGTCCTGCTTGGCCTGCTCGTGTACCTGGCTGGAGCCAAGTGCAC
TACCTGTGTGGAAGATAGGAACTCCAAGTCTCGTCTGGTGCTCATCTCTGGCATCATCTTTGTCATTTCT
GGGGTCCTGACGCTCATTCCTGTCTGCTGGACTGCCCACTCTATCATCCAGGACTTCTACAACCCCTTGG
TGGCTGATGCTCAAAAGCGGGAGCTGGGGGCCTCCCTCTACCTGGGCTGGGCAGCCTCAGGCCTTTTGCT
GCTGGGTGGAGGGCTACTATGCTGCGCCTGCTCTTCTGGAGGGACCCAGGGACCCAGACATTACATGGCC
TGCTATTCTACATCTGTCCCACATTCTCGGGGACCCCCCGAATATCCCACCAAGAATTATGTGTGATGCT
CACTGGGGAGTGAGGCTCTGCTAGCCAGGGAACCTGAGCTGAGCCATCAAGAAAGGTTACGGAGTAGTTT
GGGGGTTGTCTTATTTCTTGTTTTTCTTTTGTACTACTGGGTATTGAACCTGGGGCCCCACGCATTTGGT
AGGCAAGCACTCACCAGTGAGTCATGTGGTGCCCTGTCTGTCCCTAGGGTTTGTTCCACCTGTTTTTGAG
ACAAGCTCTTCTCATGGAGCTCTGATCGACCTCCAGCTCCAGTTTTCCTGCCTCAACCTGAGTCCAAGCT
CCACCTCTCTCTCTGCTGCTGGCATTTCTCACTTTTAGCTACTGAGGCTGGGAGGATGGGACACTTGAGT
TTCTGCGTCATTATTCATTCTGGGGATCTTCTGTGCAGTGTTCTAAGGCTGCCTGGCCTTTGTTTTTCTC
AAAATATCCTGTCCCAGTCCCAAGAGTTCCTGCTGTGGCCGGAGGTAACTCACAGGACAGACGCACCCCT
TCCTGGTCAGACTTCTCTCCAGCCCTGGAAGGGCAGGTGATAAGTTACCAAGGAATTTTCTACCCTGAGA
CTTCCAACCTTTGGCCCCTGAATCCCATCGCCAAGGTTACTGTGTACTCTCCCTACAAAAGGTCCCAGCT
GTGCTGTAGACCCTCCTCCCCCACACCTTGCACACTTCCCTGCTCACACAATGCTTTACTAAATAAAACA
TGATTTTTTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30028814 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30028814 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19550 same embryo
 EMAGE:19553 same embryo
 EMAGE:19551 same embryo
 EMAGE:19549 same embryo
 EMAGE:19554 same embryo
 EurExpress:euxassay_004952 same experiment
 MGI:4823914 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS