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EMAGE:19595

Pqbp1 polyglutamine binding protein 1 ( MGI:1859638)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595
"Pseudo-wholemount" of euxassay_004993. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004993_01 euxassay_004993_02 euxassay_004993_03 euxassay_004993_04
EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595
euxassay_004993_05 euxassay_004993_06 euxassay_004993_07 euxassay_004993_08 euxassay_004993_09
EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595
euxassay_004993_10 euxassay_004993_11 euxassay_004993_12 euxassay_004993_13 euxassay_004993_14
EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595 EMAGE:19595
euxassay_004993_15 euxassay_004993_16 euxassay_004993_17 euxassay_004993_18 euxassay_004993_19
EMAGE:19595
euxassay_004993_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19595Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19595_wholemount_strong.wlz
19595_wholemount_moderate.wlz
19595_wholemount_weak.wlz
19595_wholemount_possible.wlz
19595_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19595_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8029
Entity Detected:Pqbp1, polyglutamine binding protein 1 ( MGI:1859638)
Sequence:sense strand is shown

>T8029
AGAGCCTGTTGTGCTTTAAACCAAGAGCCCTTCGGTGTTGGTCTGGTCAGCTACCCACTATGCCGCTTCC
TGTTGCGCTGCAGACCCGCTTGGCGAAGAGGAGCATCCTCAAACATCTGGAGCCGGAGCCAGAGGAAGAG
ATTATTGCTGAAGACTACGATGATGATCCTGTTGACTATGAGGCCACCCGGATAGAGGGTCTGCCACCGA
GCTGGTACAAGGTGTTTGACCCTTCTTGCGGACTCCCTTACTATTGGAATGTGGAGACAGACCTTGTGTC
GTGGCTCTCACCACATGATCCTAACTTTGTCGTTACCAAATCCGCCAAGAAAGTCAGGAACAATAATGCA
GATGCTGAGGACAAGTCGGACCGGAATCTTGAAAAGGTGGACAGAAATCATGAGAAGTCAGATCGTAGTC
ATGAGAAGCCAGACAGGAGCCACGAGAAGGCAGACCGAAACCACGAGAAGAATGACAGAGAACGAGAGCG
CAACTACGACAAAGTGGATAGAGAGAGAGATCGGGACAGGGAACGAGAGCGGGCATTTGACAAGGCAGAC
CGGGAAGAGGGCAAAGACCGACGTCACCATCGCAGAGAGGAACTGGCTCCTTACCCCAAGAACAAGAAAG
CGACGAGCCGCAAAGATGAAGAATTAGACCCCATGGACCCCAGCTCATACTCAGATGCACCCCGGGGCAC
ATGGTCAACAGGACTCCCCAAGAGGAACGAGGCCAAGACAGGTGCTGACACCACGGCAGCTGGGCCCCTC
TTCCAGCAGCGCCCTTACCCTTCCCCGGGCGCTGTGCTCCGCGCCAATGCAGAAGCCTCCCGAACCAAAC
AGCAGGACTGACTGACCCCTTGTTCCCTGTAGCTTTGGCAGTTTGCGTTTCTGTGTTTCTTCCTTGTGGC
TCTGGGACAGGAGCCATGGCTTCTATGTGCTGCATTATTATTCCACCAGTGAGCTACACTCCCGGCCCCT
TTAGTGTTGTTTGTAAACAACAAGCCCTTGTTGTTTAATAAAAGCTTTTTTTGTGGAACATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30015428 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30015428 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19596 same embryo
 EMAGE:19597 same embryo
 EMAGE:19593 same embryo
 EMAGE:19594 same embryo
 EurExpress:euxassay_004993 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS