Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:19616

Pou2af1 POU domain, class 2, associating factor 1 ( MGI:105086)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19616
euxassay_005083_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19616Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19616_wholemount_strong.wlz
19616_wholemount_moderate.wlz
19616_wholemount_weak.wlz
19616_wholemount_possible.wlz
19616_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19616_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8063
Entity Detected:Pou2af1, POU domain, class 2, associating factor 1 ( MGI:105086)
Sequence:sense strand is shown

>T8063
AAGAGGTAATCCCCAGTCACATTAAAGAAGCCAAACTGTCTGCTTCAAAGAGAAAAGGCAACATCCTGTC
ACAAGCCATGCTCTGGCAAAAATCCGCAGCTCCAGAGCAAGCTCCTGCCCCACCAAGGCCACACCAGGGT
GTTCGAGTCAAGGAGCCAGTGAAGGAGCTACTGAGAAGAAAGCGTGGCCATACCAGCGTTGGGGCAGCTG
GGCCACCGACCGCGGTGGTACTGCCCCACCAGCCCCTGGCCACCTACAGCACTGTGGGTCCTTCCTGCCT
TGACATGGAGGTTTCTGCTTCCACAGTGACAGAGGAGGGAACATTATGTGCTGGCTGGCTCTCCCAACCT
GCCCCGGCCACTCTTCAGCCATTGGCTCCATGGACACCCTACACGGAGTATGTGTCCCATGAAGCTGTCA
GCTGCCCCTACTCCACTGACATGTACGTGCAGCCTGTGTGCCCCAGCTACACAGTGGTGGGACCCTCCTC
GGTGTTGACCTATGCTTCTCCACCACTCATCACTAATGTCACGCCAAGAAGCACTGCTACACCCGCGGTG
GGGCCCCAGCTGGAGGGTCCCGAGCACCAGGCGCCCCTCACTTATTTCCCGTGGCCTCAGCCCCTTTCCA
CACTGCCCACCTCCAGCCTGCAGTATCAACCTCCTGCCCCAACCCTGTCTGGGCCCCAGTTTGTCCAGCT
CCCCATCTCTATCCCAGAGCCAGTCCTTCAGGACATGGATGACCCCAGAAGGGCCATCAGCTCCCTGACC
ATTGACAAGCTGCTTCTGGAGGAAGAGGAAAGCAACACGTACGAGCTCAACCACACCCTCTCCGTGGAGG
GCTTTTAGGGCTGGCTTGCATCTAACAGATGTTTCACCCATAGCTGAGATTTTAAAAGTGTTCAATAGAG
CCCAGACTTCTGTTTGAAGTAGCTATTTCACAGGCTTCCTTTCTTCCTAAAGCTAAATTGTATCCCTTCT
TTTCTCCCTTCTTCCTTCCCTCGCTTCCTTCCTTCCCCCACTGCCATCTTGCTTATTTCTTATTTCTCCT
TCCAGTTTTCTTCCTCTGGAGCGGCAAATGATAGTGATATTATGAACAACGCTTTATACGGAATGTCACC
AAGTCTGCAGCTCAGGGTTTTCCTTTGGTGGCACATCATTGGGGAAGCAACCTTCTTTCAGGTGCCCCCT
GTTTCCTGGTAGCAGTAGCTTTATAGATCTACTCTATGATACGTTCTGCGCCCCAGTTTTGTTTTGTGTG
CTGTTCTCAGCCTTGGCCAGATATACTATCTAAGTGGATGTTTCTGGTCTGGTTACAGGGGGATGGGACA
GGACCATCAGGGTGGGTAGGGACAGTGAGTGAGTGATGGGAGACGGGGCTGAGGAGCAGCAGGACACACA
TGTGTGTCTGTGGTTAGAGAGGGAGTGAGGAGGGGCAGGGGAAGGAGTGATCTAACAGCTCTGAAAAAAA
ATACCACTTTAATGTGGTTTAGCTGTTCTTGTCAGCGATTAGGAGGAAAGCTGGATATGGTATGGAGGAT
AAATGACGAGTCTGCTTATTTCTGCCTCTCTGCAGGCCCGCTAACATGATGCCAGCACTTAAAATACTTC
TGTCAGCATATTGCCATAGCAACAGGAAAAGAAACAGGTGAAGCCGATCATTGAGGAGGCTTGCACTTAG
TCCTTCCACGTGGGCTTTTAATTCCTGTTGTGACTCACCCAGGGCCATCCTGACGCGTTGCTATGGATTC
TTGCGCCCACTCACCGGCTGTCTCTGGGGTCCTGAAGTCCTGGTCAGCAGGCCCACTGGCCTTCATTTTC
AGTTTTATCAGTTTTATTGCAGTTTTTGCTGGAGAAGCATAACACTTGCTGTTGAGTGTTTTGCTGTCTC
CTAGTGCTTTGCTCCTGAAGTGGATGTGTCTTTGGGAACTGGCCCATTGTTTACTAATGATACCATCATT
ACACATACACAAGTTTTAGTCTGTAGAATCCATGTAGAACCAATAGATCTTCTAGAAATGACAGTTTCTT
TGATATCCCACCCTCTTTCTTTCTGCTTCCAATGAAAACTTAGAGCTACCTGTTTTTTTTTTCTTCTTCT
TCTTCTTTCTTTCTCTGCTTTGTGTTTATTTTGATTCAGACATCTCATTATCTACCTGAAGTCCTGGTAT
ACTTAGCTTGAATTTGTTATTCCTCTTTAATATTTAGATTAAATGCTAGATCTGAATGGTAGGTTTACAC
TTCTGTTGGTGGTTACCATGAACAAGAAAGGGAGAGGGAAGCCTCAGCCTATTTAATTAAGACCTTGTTG
CACTTAAAAACACTATTTAAGATTTCCCAGCTACTTGGGAGTTTGAGGCAATCACAGAGGAGTTAACACT
GGGAAAACAAACAAAACAGCAAAGAAAGTAGTGTGAGCGGTTGCTGGGATCGAATTGGCATCTTTTTCGC
TTCTTATCTTGAGACCTCACGTCTTGGCTGCAGGCATCCAAACAGATTTCCTCCAGAGCCTCATTTGCAA
CATTTTCAATAAAGATTGGTTAGATGAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30077096 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30077096 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19614 same embryo
 EMAGE:19618 same embryo
 EMAGE:19615 same embryo
 EMAGE:19617 same embryo
 EurExpress:euxassay_005083 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS