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EMAGE:19678

Med31 mediator of RNA polymerase II transcription, subunit 31 homolog (yeast) ( MGI:1914529)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678
"Pseudo-wholemount" of euxassay_006126. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006126_01 euxassay_006126_02 euxassay_006126_03 euxassay_006126_04
EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678
euxassay_006126_05 euxassay_006126_06 euxassay_006126_07 euxassay_006126_08 euxassay_006126_09
EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678
euxassay_006126_10 euxassay_006126_11 euxassay_006126_12 euxassay_006126_13 euxassay_006126_14
EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678 EMAGE:19678
euxassay_006126_15 euxassay_006126_16 euxassay_006126_17 euxassay_006126_18 euxassay_006126_19
EMAGE:19678
euxassay_006126_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19678Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19678_wholemount_strong.wlz
19678_wholemount_moderate.wlz
19678_wholemount_weak.wlz
19678_wholemount_possible.wlz
19678_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19678_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8560
Entity Detected:Med31, mediator of RNA polymerase II transcription, subunit 31 homolog (yeast) ( MGI:1914529)
Sequence:sense strand is shown

>T8560
CGTGCTGGGAGGACACCTCAAGGAACTGAGGGAGTCGCTTCGTGGAGGGGGTGAGGGAGGGCCCCTCTCG
GTGGCGCTGGGAGGTCTCCACCTGCCGGGAAGACGTTCGAACCTGCCGGGAGGACGTCTCCACGCGGTGG
GATGACGTTTCCTCGCGGTGGGACGACGTCTCCACGCGGACAGTCGATGTCTCCTTGTGGCGGGTGCTTT
CCACTCGCGGGGCGGAGGACTTGCTCCTAAGGGGCGAGGCCATCCTGCCCATACACCTTGGTCAGGTGGG
ACAAAGAGGCCCAAGGATCATGCTCTGCGTCACGTCACACAGGGAAAGGTGACGTCAGGGTGGTGTATTA
CGTCGGGGTAGGTAGCAGGACTCTGAGACCTAAAAAATGAGAAGTCCTCCGGCACGCCCCGCTCGATATC
TGCGCGCGCAGCCGGCCGGGTCTGCACAGATAGGTGGGGCTAATTTTCCCATAAGTGAGGTTGTCCCCGC
CCTCGTGTCCCACTCTGCCCCGCGACCGGAAGTAGGAGCCGTGGCTTCCGGATTCTCACCAATCGAAGTC
GCGGTTCGGTCGGGGCTGGTGGTGTTCGCCTCACTCTGATTGTTATGGCCGCGGCCGTCGCTATGGAGAC
AGATGATGCTGGAAATCGGCTTCGGTTTCAGTTGGAGTTGGAATTTGTGCAATGTTTAGCCAACCCAAAC
TACCTTAATTTTCTTGCCCAAAGAGGTTACTTCAAAGACAAAGCTTTTGTTAATTATCTTAAGTATTTGC
TTTACTGGAAAGAACCAGAATATGCCAAATATCTAAAGTACCCTCAGTGCTTACATATGTTAGAGCTGCT
CCAGTATGAGCACTTTCGCAAGGAGCTGGTGAATGCGCAGTGTGCGAAGTTCATCGACGAGCAGCAGATT
CTGCACTGGCAGCACTACTCTCGGAAGCGGGTGCGTCTTCAGCAAGCCCTGGCCGAGCAGCAGCAGCAGA
ATAACACAGCAGGGAAATGAAGAGCTGGGGCCAGGTCAGGCTCTTAGGACGTGTATATAATGTATTGCTA
TTGTACAGTACAGAGAAAAAGACTCTTCTGCCCCCTTTACTGTAGCCCTCAGAACCATTAGTGTTATTTT
TTAGTTGGCAAATTTTTTATTAATAAATTATTTCTATTTAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5709831 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5709831 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19680 same embryo
 EMAGE:19679 same embryo
 EMAGE:19677 same embryo
 EMAGE:19681 same embryo
 EurExpress:euxassay_006126 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS