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EMAGE:20295

Ddx46 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 ( MGI:1920895)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20295 EMAGE:20295 EMAGE:20295 EMAGE:20295 EMAGE:20295
"Pseudo-wholemount" of euxassay_012543. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012543_01 euxassay_012543_02 euxassay_012543_03 euxassay_012543_04
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euxassay_012543_05 euxassay_012543_06 euxassay_012543_07 euxassay_012543_08 euxassay_012543_09
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euxassay_012543_10 euxassay_012543_11 euxassay_012543_12 euxassay_012543_13 euxassay_012543_14
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euxassay_012543_15 euxassay_012543_16 euxassay_012543_17 euxassay_012543_18 euxassay_012543_19
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euxassay_012543_20 euxassay_012543_21 euxassay_012543_22 euxassay_012543_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20295Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20295_wholemount_strong.wlz
20295_wholemount_moderate.wlz
20295_wholemount_weak.wlz
20295_wholemount_possible.wlz
20295_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20295_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31436
Entity Detected:Ddx46, DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 ( MGI:1920895)
Sequence:sense strand is shown

>T31436
AGTGCAGGTTGGAGGCAGGAGTGTGGTTTGCTCCGATGTGGAACAGCAGGTGATTGTGATTGAAGAAGAA
AAGAAATTCTTGAAATTGCTGGAGCTTTTAGGCCATTATCAGGAGTCAGGATCTGTCATTATATTTGTGG
ATAAGCAGGAACACGCAGATGGTCTTCTGAAGGACTTGATGAGAGCATCGTACCCTTGCATGTCTCTTCA
CGGAGGTATTGATCAATATGACAGGGACAGTATCATAAATGACTTTAAGAATGGAACCTGCAAGCTCCTC
GTTGCCACATCTGTTGCAGCTCGTGGTCTCGATGTGAAACATCTAATTCTTGTAGTGAATTACAGCTGCC
CCAATCATTATGAAGATTATGTGCACAGAGCTGGGCGGACTGGAAGAGCGGGCAACAAGGGTTATGCCTA
CACCTTCATCACAGAGGATCAAGCTCGATATGCTGGTGACATCATTAAAGCTCTTGAATTGTCAGGGACC
GCAGTGCCTCCTGACCTAGAAAAACTCTGGAGTGACTTCAAAGATCAACAGAAAGCTGAAGGAAAAATAA
TTAAAAAGAGTAGTGGCTTCTCTGGCAAGGGATTCAAGTTTGATGAAACAGAACAGGCTTTAGCCAATGA
GAGGAAAAAGCTGCAGAAAGCTGCTCTTGGCCTGCAAGATTCTGATGACGAGGATGCTGCAGTTGATATT
GATGAACAGATTGAAAGCATGTTTAATTCAAAGAAGAGAGTAAAGGACATGGCTGCACCCGGCACATCCA
GCGTGCCCGCGCCCACTGCAGGCAATGCTGAGAAGCTAGAAATCGCCAAGAGATTGGCT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4505095), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 26838. Forward Primer - name:026838_F_IRAV59-62_F12_Ddx46, sequence:AGTGCAGGTTGGAGGCAG; Reverse Primer - name:026838_R_SP6_IRAV59-62_F12_Ddx46, sequence:GAGCCAATCTCTTGGCGA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20298 same embryo
 EMAGE:20296 same embryo
 EMAGE:20297 same embryo
 EMAGE:20294 same embryo
 EMAGE:20293 same embryo
 EurExpress:euxassay_012543 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS