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EMAGE:20464

Chid1 chitinase domain containing 1 ( MGI:1915288)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464
"Pseudo-wholemount" of euxassay_012735. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_012735_01 euxassay_012735_02 euxassay_012735_03 euxassay_012735_04
EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464
euxassay_012735_05 euxassay_012735_06 euxassay_012735_07 euxassay_012735_08 euxassay_012735_09
EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464
euxassay_012735_10 euxassay_012735_11 euxassay_012735_12 euxassay_012735_13 euxassay_012735_14
EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464 EMAGE:20464
euxassay_012735_15 euxassay_012735_16 euxassay_012735_17 euxassay_012735_18 euxassay_012735_19
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euxassay_012735_20 euxassay_012735_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20464Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20464_wholemount_strong.wlz
20464_wholemount_moderate.wlz
20464_wholemount_weak.wlz
20464_wholemount_possible.wlz
20464_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20464_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31624
Entity Detected:Chid1, chitinase domain containing 1 ( MGI:1915288)
Sequence:sense strand is shown

>T31624
AGGCCCAGAGGTTGGTTCCTGCTGTGACATGCCTGCCATGTGGCCACTTCTTCATGTCCTCTGGCTTGCT
CTGGTCTGTGGCTCTGTTCACACCACCCTGTCAAAGTCAGATGCCAAAAAAGCTGCCTCAAAGATGCTGC
TGGAAAAGACTCAGTTTTCAGATAAACCTGTCCAAGATCGGGGTCTGGTGGTGACGGACATCAAAGCTGA
GGATGTGGTTCTTGAACATCGTAGCTACTGCTCATCAAGGGCTCGGGAGAGAAACTTTGCTGGAGAGGTC
CTAGGCTACGTCACTCCATGGAACAGCCATGGCTACGATGTTGCCAAGGTCTTTGGGAGCAAGTTCACAC
AGATCTCACCAGTCTGGTTGCAACTGAAGAGACGTGGTCGTGAGATGTTTGAAATTACAGGCCTCCATGA
TGTGGACCAAGGGTGGATGCGAGCTGTCAAGAAGCATGCCAAAGGTGTGCGCATAGTGCCTCGACTTCTG
TTTGAAGACTGGACTTATGATGATTTCCGAAACGTCTTAGACAGTGAGGATGAGATAGAAGAGCTCAGCA
AGACTGTGGCACAGGTGGCAAAGAACCAGCATTTTGACGGTTTTGTGGTGGAGGTCTGGAGCCAGTTGCT
GAGCCAGAAACATGTAGGCCTCATTCACATGCTTACTCACTTGGCTGAGGCGCTGCACCAGGCCAGGCTG
CTGGTCATTCTGGTCATCCCACCTGCTGTCACGCCGGGGACTGACCAGCTGGGCATGTTTACACACAAGG
AGTTTGAGCAACTGGCCCCCATACTAGATGGCTTCAGCCTCATGACATATGACTATTCCACGTCACAACA
GCCTGGCCCTAATGCTCCCTTGTCATGGATTCGAGCCTGTGTCCAGGTCCTAGACCCCAAGTCACAGTGG
CGAAGCAAGATCCT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:2647540), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 13049. Forward Primer - name:013049_F_IRAV08-11_B09_3110023E09Rik, sequence:AGGCCCAGAGGTTGGTTC; Reverse Primer - name:013049_R_SP6_IRAV08-11_B09_3110023E09Rik, sequence:GAGGATCTTGCTTCGCCA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20465 same embryo
 EMAGE:20469 same embryo
 EMAGE:20468 same embryo
 EMAGE:20467 same embryo
 EMAGE:20466 same embryo
 EurExpress:euxassay_012735 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS