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EMAGE:20573

Atp5b ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit ( MGI:107801)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573
euxassay_012793_01 euxassay_012793_02 euxassay_012793_03 euxassay_012793_04 euxassay_012793_05
EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573
euxassay_012793_06 euxassay_012793_07 euxassay_012793_08 euxassay_012793_09 euxassay_012793_10
EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573
euxassay_012793_11 euxassay_012793_12 euxassay_012793_13 euxassay_012793_14 euxassay_012793_15
EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573 EMAGE:20573
euxassay_012793_16 euxassay_012793_17 euxassay_012793_18 euxassay_012793_19 euxassay_012793_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20573Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20573_wholemount_strong.wlz
20573_wholemount_moderate.wlz
20573_wholemount_weak.wlz
20573_wholemount_possible.wlz
20573_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20573_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38277
Entity Detected:Atp5b, ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit ( MGI:107801)
Sequence:sense strand is shown

>T38277
CAGAAAGTACTGGATTCAGGGGCACCAATCAAAATTCCTGTTGGTCCTGAGACCTTGGGCAGAATCATGA
ATGTCATTGGAGAACCTATTGATGAGAGAGGTCCTATCAAAACCAAACAATTTGCTCCTATTCATGCTGA
GGCTCCTGAGTTCATAGAGATGAGTGTTGAGCAGGAGATTCTGGTGACTGGGATAAAGGTTGTGGATCTG
CTGGCCCCATACGCCAAGGGTGGGAAAATCGGACTCTTTGGAGGTGCTGGCGTTGGAAAGACAGTACTGA
TCATGGAGCTAATCAACAATGTCGCCAAAGCCCATGGTGGTTACTCTGTATTTGCTGGTGTTGGTGAGAG
GACCCGTGAGGGCAATGATTTATACCATGAAATGATTGAATCTGGTGTTATCAATCTAAAAGATGCCACT
TCCAAGGTAGCGTTGGTATATGGACAGATGAACGAACCACCTGGCGCTCGAGCCCGGGTAGCTCTGACTG
GTTTGACCGTTGCTGAATACTTCAGAGACCAGGAGGGCCAAGATGTCCTGCTGTTTATTGACAACATCTT
CCGCTTTACCCAGGCTGGCTCAGAGGTGTCTGCCTTATTGGGCAGAATCCCTTCTGCTGTAGGCTACCAG
CCCACCCTAGCCACCGACATGGGCACAATGCAGGAAAGGATCACCACCACCAAGAAGGGATCGATCACCT
CGGTGCAGGCTATCTATGTGCCTGCTGATGACCTGACTGACCCTGCCCCTGCAACCACCTTTGCCCATTT
GGATGCTACCACTGTGTTGTCCCGGGCTATTGCTGAGTTGGGCATCTATCCAGCTGTGGATCCA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 146486. Forward Primer - name:146486_F_cDNA_Atp5b, sequence:CAGAAAGTACTGGATTCAGGGG; Reverse Primer - name:146486_N_SP6_cDNA_Atp5b, sequence:TGGATCCACAGCTGGATAGATG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20572 same embryo
 EMAGE:20574 same embryo
 EMAGE:20576 same embryo
 EMAGE:20575 same embryo
 EMAGE:20571 same embryo
 EurExpress:euxassay_012793 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS