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EMAGE:20734

Laptm4a lysosomal-associated protein transmembrane 4A ( MGI:108017)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734
"Pseudo-wholemount" of euxassay_013969. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013969_01 euxassay_013969_02 euxassay_013969_03 euxassay_013969_04
EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734
euxassay_013969_05 euxassay_013969_06 euxassay_013969_07 euxassay_013969_08 euxassay_013969_09
EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734
euxassay_013969_10 euxassay_013969_11 euxassay_013969_12 euxassay_013969_13 euxassay_013969_14
EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734 EMAGE:20734
euxassay_013969_15 euxassay_013969_16 euxassay_013969_17 euxassay_013969_18 euxassay_013969_19
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euxassay_013969_20 euxassay_013969_21 euxassay_013969_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20734Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20734_wholemount_strong.wlz
20734_wholemount_moderate.wlz
20734_wholemount_weak.wlz
20734_wholemount_possible.wlz
20734_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20734_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T39419
Entity Detected:Laptm4a, lysosomal-associated protein transmembrane 4A ( MGI:108017)
Sequence:sense strand is shown

>T39419
GACGGTGAATTACCGAGTTACCCTCAATTCCTACAGCCCCCGACAGCGAGCCCAGCCACGCGCACCGCGG
TCAAACAGCGCCGGAGAGAGTTGAACTTTTGATTGGGCGTCTGTATGTGGCAGAAGGCGGAGGGAGAGAT
TCCGAGCCGACGTCCCGCGAGAGCCGCCGGGCCCAGAGCGCAGGCCGACAGGAGTTGGCAAGGGCCGGGC
CGAGGGCGGGCCAGAAGACGCGTCCTTTGGCTGTGGACACCGTCGTAGAGTCGTCTGGGTTGAACCGCTG
GGCCGAAAGCTTTTGTCAGGGGCCTGGGCGAGAACGAGGCCCGCGAGGTTCCGGATGGTGTCCATGACTT
TCAAACGGAGCCGCAGTGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTTCCATGTCCGCACCGGGAC
GATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTTGATGGCCATTTTGCTGACCGTGGAGGTGACT
CATCCAAATTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGTAATTACTATTCATCTGAGAGAA
TGGCTGATAATGCCTGCGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTTTA
TGGAGCCATTTCTTATCAAGTGGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 98159. Forward Primer - name:098159_F_cDNA_Laptm4a, sequence:GACGGTGAATTACCGAGTTACC; Reverse Primer - name:098159_N_SP6_cDNA_Laptm4a, sequence:GCCCACTTGATAAGAAATGGCT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20737 same embryo
 EMAGE:20736 same embryo
 EMAGE:20738 same embryo
 EMAGE:20735 same embryo
 EMAGE:20733 same embryo
 EurExpress:euxassay_013969 same experiment
 MGI:4825869 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS