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EMAGE:21041

Mc3r melanocortin 3 receptor ( MGI:96929)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041
"Pseudo-wholemount" of euxassay_008397. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008397_01 euxassay_008397_02 euxassay_008397_03 euxassay_008397_04
EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041
euxassay_008397_05 euxassay_008397_06 euxassay_008397_07 euxassay_008397_08 euxassay_008397_09
EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041
euxassay_008397_10 euxassay_008397_11 euxassay_008397_12 euxassay_008397_13 euxassay_008397_14
EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041 EMAGE:21041
euxassay_008397_15 euxassay_008397_16 euxassay_008397_17 euxassay_008397_18 euxassay_008397_19
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euxassay_008397_20 euxassay_008397_21 euxassay_008397_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21041Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21041_wholemount_strong.wlz
21041_wholemount_moderate.wlz
21041_wholemount_weak.wlz
21041_wholemount_possible.wlz
21041_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21041_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35262
Entity Detected:Mc3r, melanocortin 3 receptor ( MGI:96929)
Sequence:sense strand is shown

>T35262
TGAGGATCTGTGTGTGGGTAAGTCAGTTTGATCTAGCACATAGCCTGGAAGAATCAGGCAAAGCAGCCCT
GAGTGTCATCTGTGTTCATTGCTAGGCACCCAGGGTTTGTGGCCCCTGCCTGCTTATTGGCTTTGTACCA
GTAACTGTGCTTCAAGCCAACCAGACCGGAGGGCTCTCGTGAGCAGAAAGAGTGCTTAGACTTCCGGCAA
GCATCCTGGCTCACAGCGGCCACCTCCTGACCACTACCGGGAGAGCTTTGCACATATTCTGTGGGAGATT
GAGTGAAGCCCTGAAAACAATGTGATATTTGCTGCTCCCTTCCAGAACTTACATCTGTGCCAGCCTCCCC
GAACCCCTGCACAGAGACATGACCCCCTTCTCCCTGTGCCGTTGTCATGGTTGTTATTATTGTTGGAGTT
TTGTTCGTTAAAATCTAAGCTTCAAACCTAATACATCAAAGCGCTCTAGTCAGTGAGAGGTCCTAGGATC
CTGGCCACTGCAAGGTAGATGTTACTCTTTAAAGAACAAAGCAAGCAAGCAAACAAACAAACAAAACGAT
GGTCTTCTACTGTTTCGTCTCTGCCTTTCAAACGCGAAGAAAGTGCAGGCAGGAAGGTGTGCGTTTCACT
AGAAACTGCCTTGCTGCCGTTGGTGATCATTTGAGCAGCT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 94289. Forward Primer - name:094289_F_cDNA_Mc3r, sequence:TGAGGATCTGTGTGTGGGTAAG; Reverse Primer - name:094289_N_SP6_cDNA_Mc3r, sequence:AGCTGCTCAAATGATCACCAA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_008397 same experiment
 EMAGE:21037 same embryo
 EMAGE:21038 same embryo
 EMAGE:21039 same embryo
 EMAGE:21040 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS