EMAGE mouse gene expression spatial database

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EMAGE:21071

Serpina5 serine (or cysteine) peptidase inhibitor, clade A, member 5 ( MGI:107817)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007038. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007038_01	euxassay_007038_02	euxassay_007038_03	euxassay_007038_04

euxassay_007038_05	euxassay_007038_06	euxassay_007038_07	euxassay_007038_08	euxassay_007038_09

euxassay_007038_10	euxassay_007038_11	euxassay_007038_12	euxassay_007038_13	euxassay_007038_14

euxassay_007038_15	euxassay_007038_16	euxassay_007038_17	euxassay_007038_18	euxassay_007038_19

euxassay_007038_20	euxassay_007038_21	euxassay_007038_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21071_wholemount_strong.wlz

21071_wholemount_moderate.wlz

21071_wholemount_weak.wlz

21071_wholemount_possible.wlz

21071_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21071_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 8 9 0 1 2

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9990
Entity Detected:	Serpina5, serine (or cysteine) peptidase inhibitor, clade A, member 5 ( MGI:107817)
Sequence:	sense strand is shown >T9990 AGAGTCTCTGTGGTCAGTGACATTTGCCGGCTGCAATTCCTCTGCTCTGCTCTCTGTCCTCTTGTAAGCC AGGTGGACTATACCTTGACACTCAGCCACCACGATACAGAAGCTGTCACCACAATGAGGTTCTTCCCCAT TCTGTGCCTGGTGCTGTTCATCAGCCATGGGGTGGCTTCCCGCCGACACTCCCATTCCAAGAAGAAGAAG GCTAAAGAGTCCTCGGTGGGTGCTGTGGGACCTCCCAGTAGCAAAGACTTTGCTTTCAGACTCTACAGGG CCTTGGCTTCTGAATCCCCTGGTCAGAATGTCTTCTTCTCCCCCTTGAGCGTGTCTATGAGTTTGGGCAT GCTCTCCCTGGGGGCTGGCTTGAAGACGAAGACCCAGATCCTAGATGGCCTAGGCCTCAGCCTCCAGCAA GGCCAAGAAGACAAGCTCCACAAGGGCTTCCAACAGCTGCTACAGAGATTCAGGCAGCCTAGTGATGGCC TGCAGCTGAGCCTGGGCAGTGCCCTTTTTAAAGACCCAGCAGTACATATCCGGGACGACTTCCTGAGTGC CATGAAGACACTGTACATGTCAGACACTTTCTCTACCAACTTTGGGAACCCTGAAATTGCCAAGAAGCAG ATCAACAACTATGTAGCCAAGCAGACCAAGGGCAAGATTGTAGACTTGATCAAGGATCTTGACAGCACCC ATGTCATGATAGTGGTAAATTACATCTTCTTCAAAGCCAAGTGGCAGACGGCCTTCAGTGAGACAAACAC CCACAAGATGGATTTCCATGTGACCCCCAAAAAGACCATACGGGTGCCCATGATGAACCGTGAAGATGAG TATTCCTACTACCTGGACCAAAACATCTCCTGCACGGTGGTGGGGATCCCTTATCAAGGCAATGCCATTG CTCTATTTATTCTCCCCAGCGAGGGCAAGATGAAGCAGGTGGAGGATGGCCTGGACGAGAGAACATTGAG GAACTGGCTTAAGATGTTCACCAAGAGACGCTTAGATCTTTACCTCCCCAAGTTCTCCATTGAGGCTACC TACAAACTGGAAAATGTCCTCCCCAAGCTGGGCATCCAGGACGTCTTCACCACCCATGCTGACTTGTCTG GCATTACTGACCATACCAATATCAAGTTGTCTGAGATGGTGCACAAATCCATGATGGAGGTTGAAGAGTC AGGAACCACAGCAGCTGCCATCACAGGAGCCATCTTCACATTCAGATCTGCTCGGCCGAGCTCCCTGAAG ATAGAATTCACCAGACCCTTTCTGCTGACCCTTATGGAGGATTCACATATACTTTTCGTTGGCAAGGTGA CCCGGCCCTGAGGTGGGACTCCTTCTGAAACTCATGGGCTTACACAGAGGGAGCCAGGCATGTTCTTCAG CCCATCCATCTCTTGGTTGCTAGTGATTTTCATAGAGTAGGTTGACTAGTAAGGTGTTGTAAGTGATAAG ATCAATATCCCTATGGCTGCTTCCTTGATCACAGTTGCAAGATGTGTTCTTGCTCTCATCCTTCATCATT GACACTGACCCTAAAGAGGTCACTTGATTTCTCCAAGGTCCTACCATCTTATATGTGACATAGTCGTGCC AAGACTCCAGGCCTCTCCTGCTCAGTCTAGCTCTACAAAGTTCCCTAAGAGACTGGTCCGCATAGATAAA GGTCACCAGGAAGCACAGTCATAAACCTGGTCCCCCACCTATCAGCACCAACTCTCAGTTCATCAGGGTT GAGAAAGGACACTGGATTGAGCTTCTGAAATGCCGCTGGTAGCTCTGTAACATGGGAATGGAAATGTCCC TCTCTGGGCCTGTGTTTCTTTGTGTGTCCAGTGAAGGAACAGAACTAGAAGCCCATTCAGCAACCTGTGA GATTCTTACACAGGGGTTGGCTTCTCTATGTTAGCCAGGGTTGCTGTAAGGACTCAGGTTAGTAGCATAC TTGAGTAATCAGGGTCAAAGTGTCTCACCACAAACAAAGGTATCAAATCACAAGCCTGGCTGGCTGAGGT GGTGTGGTAGAGGTCTGTGGTAAACAGCAGAACTTAGGGTGCAGACTGACTTATTGATTTCCACCTTGGC AATGGCAATAAAGCATTTTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30285598 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30285598 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_007038 same experiment
	EMAGE:21066 same embryo
	EMAGE:21067 same embryo
	EMAGE:21068 same embryo
	EMAGE:21069 same embryo
	EMAGE:21070 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source