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EMAGE:21141

Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 ( MGI:1921765)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21141
euxassay_005580_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21141Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21141_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21141_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
strong strong
single cellstrong expression: see section 1
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4143
Entity Detected:Cdkal1, CDK5 regulatory subunit associated protein 1-like 1 ( MGI:1921765)
Sequence:sense strand is shown

>T4143
GGTTTTTTTCCTCTCAGTTCGGACAGATTCATCTTTCAAGAGGACTTGAGACCAATTTCAGAAAATCAAG
ATGCCTTCTGCGTCTTGTGATGTACTGCTGGATGACATAGAAGATATCATATCACAGGAAGATTCAAAGC
CACAGGACAGACAGTTCTCAAGAAAGCATGTGTTTCCTAAAGTACGAAGGCGGAATACCCAAAAATATTT
GCAAGAAGAGCCCAGGCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATCCGAACATGG
GGCTGCTCACATAATAATTCGGATGGAGAATACATGGCTGGACAGCTTGCTGCCTATGGCTATAAAATTA
CAGAGAATGCATCAGATGCAGATCTGTGGCTCCTGAACAGTTGTACTGTGAAAAATCCAGCTGAAGACCA
CTTTAGAAACTCAATCAAAAAAGCTCAAGAAGAGAATAAGAAAGTTGTCCTCGCTGGCTGTGTTCCCCAA
GCCCAGCCTCGTCAGGACTACCTCAAAGGACTGAGCATCATCGGGGTTCAGCAGATAGATCGTGTGGTAG
AAGTTGTGGAGGAAACAATAAAAGGTCACTCAGTGAGGCTCCTGGGCCAGAAGAAAGACAACGGGAAGCG
CTTGGGTGGAGCTCGACTGGATTTGCCGAAGATCAGAAAGAATCCGCTGATAGAAATCATTTCCATCAAC
ACGGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAACCTGGCCAGCTATCCCA
TTGATGAGCTTGTGGAGAGAGCCAAGCAATCCTTTCAAGAGGGTGTTTGTGAGATATGGCTGACCAGCGA
GGACACCGGGGCCTATGGCAGAGACATTGGCACAGATCTCCCCACACTCCTGTGGAAGTTGGTGGAAGTG
ATTCCTGAGGGAGCCATGCTGAGGCTGGGCATGACAAATCCACCATATATTTTAGAACATCTGGAGGAAA
TGGCAAAAATCCTCAACCATCCCAGAGTCTACGCTTTCCTCCACATCCCAGTGCAGTCCGCCTCTGACAG
TGTGCTCATGGACATGAAGAGAGAGTACTGCGTGGCCGACTTCAAAAGAGTCGTGGATTTTCTCAAGGAG
AAGGTTCCTGGAATAACGATTGCTACGGATATTATCTGTGGTTTTCCTGGAGAAACCGATCAGGATTTTC
AAGAAACAGTGAAACTTGTTGAAGAGTACAAATTTCCAAGCCTCTTCATCAACCAGTTCTATCCAAGACC
CGGAACTCCTGCTGCAAAAGCCGAGCAGGTTCCAGCACATGTGAAAAAACAAAGGACAAAAGATCTTTCT
CGGGTGTTTCATTCCTACAATCCATACGATCACAAGATTGGCGAAAGACAACAAGTGCTAGTCACTGAAG
AGTCTTTTGACTCCAAGTTTTATGTTGCTCATAACCGATTCTATGAGCAGGTTTTAGTACCAAAGAACCC
TGCATTCATGGGGAAAATGGTTGAAGTCGACATTTACGAATCAGGAAAGCACTTTTTGAAAGGACAGCCA
GTATCAGAAACCAGAGTGTATACACCATCCATCAGCAAGCCACTGGCCAAGGGAGAAGTCTCAGGTTTGA
CAAAGGAATTCAGAAATAGGCTTGGGAATCATCCAAACGGAACTTCAGACACCTGTCCTGCAACTCAGCA
TGGCTCTGCGTATTCCAGAATGGTGCTGCAGATGTCCCAGTATGACTGCGCACTGAAGGTGGCTACAGGC
CTGGCTCTCCTCGCTCTCCTTTTGCATTTCTGGCCAGACTCTTTGCTTACAATGTAACTAAGTAAAGCCT
CCATAAGGAATAAGTTTCTAATTCAAGTGGTCAACAAACAAGAGGACATCAACACCAGTTTTCAAGAGAC
TGCCTTCTGAACTAGACACACTGCCTTGTCTGGATCTCTTTTGAATGCCCTCACACTGAGCTGAGCCATC
TGACCTCAGACCAGATCACAGTTTCTGAACATGTCTTTCTCATCAAACTCCTTCAGACTTCTTCCTAACA
ACAAATACAAGTGGTTGGGTTTTTTGGTTGGTTTTTGGTTTTTTTTGTTTTGTTTTGTTTTTTTTTTGTT
TTTTGTTTTGTTTTTTTTTTTTTTTGTCTCCAGTCATTGAATCCCAGCCTAAGTGCACAGAGGCTCTGCC
TATTCGTGGCTCTGGCCATCCTTTCCTTGTGTGGAAGAACATCCAGCCCTTAATAAACATTCTCCCGGCT
GTGTTTGGAGTCCCCGTGCTACAAACATCTTTTTCACAGCAGATGTGTTCCTAAAAAGTTTATATAGAAA
CCTATTTTGAGAACTTGGACCCAAGTCCACCACTTAAAGGACTCTTCCTGGCGTTCTAGAAAATGTGAAG
ATTCCATGCCTGTGGCACCCACAAACTTTCAAACAAACCATGATCCTTTCCTGACACACCGACCAGGCAT
GTTACATTTATCATTTTGACCCAACACCACCAGCCGTCTTTACTAAATGAAATGACTTCTTTCACAATAA
ACAGAATTGGTACAATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4482130 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4482130 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_005580 same experiment
 EMAGE:21140 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS