EMAGE mouse gene expression spatial database

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EMAGE:21423

C330007P06Rik RIKEN cDNA C330007P06 gene ( MGI:1924894)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_000755_01	euxassay_000755_02	euxassay_000755_03	euxassay_000755_04	euxassay_000755_05

euxassay_000755_06	euxassay_000755_07	euxassay_000755_08	euxassay_000755_09	euxassay_000755_10

euxassay_000755_11	euxassay_000755_12	euxassay_000755_13	euxassay_000755_14	euxassay_000755_15

euxassay_000755_16	euxassay_000755_17	euxassay_000755_18	euxassay_000755_19	euxassay_000755_20

euxassay_000755_21	euxassay_000755_22	euxassay_000755_23	euxassay_000755_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21423_wholemount_strong.wlz

21423_wholemount_moderate.wlz

21423_wholemount_weak.wlz

21423_wholemount_possible.wlz

21423_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21423_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2243
Entity Detected:	C330007P06Rik, RIKEN cDNA C330007P06 gene ( MGI:1924894)
Sequence:	sense strand is shown >T2243 ATCCTTGGCCGGAGCTATGCCGAAAGTCGTGTCGCGGTCGGTGGTCTGCTCAGACACCCGGGACCGCGAG GAATATGATGATGGCGAGAAGCCCCTCCATGTCTACTACTGTTTATGTGGCCAGATGGTCCTGGTGCTGG ATTGCCAGTTAGAGAAATTGCCCATGAGGCCCCGGGACCGGTCTCGCGTGATCGATGCTGCCAAACATGC TCACAAGTTTTGTAACACAGAAGATGAGGAGACTACTTATCTTCGGAGGCCTGAGGGCATTGAACGTCAG TACAGGAAGAAGTGTGCAAAGTGTGGACTGCCGCTCTTCTACCAATCCCAGCCGAAGAATGCTCCTGTGA CCTTCATTGTGGATGGAGCAGTAGTGAAATTTGGCCAAGGCTTTGGGAAAACCAATATATATACTCAGAA ACAAGAGCCTCCTAAGAAGGTTATGATGACCAAAAGGACTAAAGACATGGGCAAGTTCAGCTCTGTTACT GTGTCTACCATTGATGAAGAAGAAGAGGAGATAGAGGCTAGG
Notes:	The probe template was PCR amplified from IMAGE:1052792 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1052792 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_000755 same experiment
	EMAGE:21425 same embryo
	EMAGE:21426 same embryo
	EMAGE:21422 same embryo
	EMAGE:21421 same embryo
	EMAGE:21424 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source