EMAGE mouse gene expression spatial database

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EMAGE:21455

Faah fatty acid amide hydrolase ( MGI:109609)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


euxassay_000880_01	euxassay_000880_02	euxassay_000880_03	euxassay_000880_04	euxassay_000880_05

euxassay_000880_06	euxassay_000880_07	euxassay_000880_08	euxassay_000880_09	euxassay_000880_10

euxassay_000880_11	euxassay_000880_12	euxassay_000880_13	euxassay_000880_14	euxassay_000880_15

euxassay_000880_16	euxassay_000880_17	euxassay_000880_18	euxassay_000880_19	euxassay_000880_20

euxassay_000880_21	euxassay_000880_22	euxassay_000880_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

21455_wholemount_strong.wlz

21455_wholemount_moderate.wlz

21455_wholemount_weak.wlz

21455_wholemount_possible.wlz

21455_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:21455_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

medulla oblongata basal plate

moderate

homogeneous

moderate expression: see section 1 7

inferior glossopharyngeal ix ganglion

weak

homogeneous

weak expression: see section 8 0 not examined expression: see section 9

trigeminal v ganglion

weak

homogeneous

weak expression: see section 5 6 7 9 8 9 0 1 2 3

vagus x ganglion

weak

regional

weak expression: see section 9 0 8 9

vestibulocochlear viii ganglion

weak

homogeneous

weak expression: see section 9

vestibulocochlear viii ganglion cochlear component

weak

homogeneous

weak expression: see section 7 8 9 0

vestibulocochlear viii ganglion vestibular component

weak

homogeneous

weak expression: see section 7 8 9 0 1

nasal cavity olfactory epithelium

moderate

regional

moderate expression: see section 9 0 1 2 5 6 7 8 9 weak expression: see section 8

midgut loop

moderate

regional

moderate expression: see section 8 9 0 1 2 3 4 5 6

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T924
Entity Detected:	Faah, fatty acid amide hydrolase ( MGI:109609)
Sequence:	sense strand is shown >T924 TCCTCAGNCTGTTGGCCTACTGGGGATCGCGGGCGATCCAGGCCGGGTTTTGCAGCGGAGCTGTTGGTGT GCGCGTGCCGAGTCCTCTCGGGTGGCGGTCGGCTGCAGGAGATCATGGTGCTGAGCGAAGTGTGGACCGC GCTGTCTGGACTCTCCGGGGTTTGCCTAGCCTGCAGCTTGCTGTCGGCGGCGGTGGTCCTGCGATGGACC AGGAGCCAGACCGCCCGGGGCGCGGTGACCAGGGCGCGGCAGAAGCAGCGAGCCGGCCTGGAGACCATGG ACAAGGCGGTGCAGCGCTTCCGGCTGCAGAATCCTGACCTGGATTCAGAGGCCTTGCTGGCTCTGCCCCT GCTCCAACTGGTACAGAAGTTACAGAGTGGGGAACTGTCCCCAGAAGCTGTGCTCTTTACCTACCTGGGA AAGGCCTGGGAAGTGAACAAAGGGACCAACTGTGTGACCTCCTATCTGACTGACTGTGAGACTCAGCTGT CCCAGGCCCCACGGCAGGGCCTGCTCTATGGCGTCCCCGTGAGCCTCAAGG
Notes:	The probe template was PCR amplified from IMAGE:1925032 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1925032 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EurExpress:euxassay_000880 same experiment
	EMAGE:21453 same embryo
	EMAGE:21451 same embryo
	EMAGE:21450 same embryo
	EMAGE:21454 same embryo
	EMAGE:21452 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source