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EMAGE:21630

Cxcl12 chemokine (C-X-C motif) ligand 12 ( MGI:103556)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630
"Pseudo-wholemount" of euxassay_017924. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017924_01 euxassay_017924_02 euxassay_017924_03 euxassay_017924_04
EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630
euxassay_017924_05 euxassay_017924_06 euxassay_017924_07 euxassay_017924_08 euxassay_017924_09
EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630
euxassay_017924_10 euxassay_017924_11 euxassay_017924_12 euxassay_017924_13 euxassay_017924_14
EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630 EMAGE:21630
euxassay_017924_15 euxassay_017924_16 euxassay_017924_17 euxassay_017924_18 euxassay_017924_19
EMAGE:21630
euxassay_017924_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:21630Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
21630_wholemount_strong.wlz
21630_wholemount_moderate.wlz
21630_wholemount_weak.wlz
21630_wholemount_possible.wlz
21630_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:21630_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50265
Entity Detected:Cxcl12, chemokine (C-X-C motif) ligand 12 ( MGI:103556)
Sequence:sense strand is shown

>T50265
ACAGACAAGTGTGCATTGACCCGAAATTAAAGTGGATCCAAGAGTACCTGGAGAAAGCTTTAAACAAGTA
AGCACAACAGCCCAAAGGACTTTCCAGTAGACCCCCGAGGAAGGCTGACATCCGTGGGAGATGCAAGGGC
AGTGGTGGGGAGGAGGGCCTGAACCCTGGCCAGGATGGCCGGCGGGACAGCACTGACTGGGGTCATGCTA
AGGTTTGCCAGCATAAAGACACTCCGCCATAGCATATGGTACGATATTGCAGCTTATATTCATCCCTGCC
CTCGCCCGTGCACAATGGAGCTTTTATAACTGGGGTTTTTCTAAGGAATTGTATTACCCTAACCAGTTAG
CTTCATCCCCATTCTCCTCATCCTCATCTTCATTTTAAAAAGCAGTGATTACTTCAAGGGCTGTATTCAG
TTTGCTTTGGAGCTTCTCTTTGCCCTGGGGCCTCTGGGCACAGTTATAGACGGTGGCTTTGCAGGGAGCC
CTAGAGAGAAACCTTCCACCAGAGCAGAGTCCGAGGAACGCTGCAGGGCTTGTCCTGCAGGGGGCGCTCC
TCGACAGATGCCTTGTCCTGAGTCAACACAAGATCCGGCAGAGGGAGGCTCCTTTATCCAGTTCAGTGCC
AGGGTCGGGAAGCTTCCTTTAGAAGTGATCCCTGAAGCTGTGCTCAGAGACCCTTTCCTAGCCGTTCCTG
CTCTCTGCTTGCCTCCAAACGCATGCTTCATCTGACTTCCGCTTCTCACCTCTGTAGCCTGACGGACCAA
TGCTGCAATGGAAGGGAGGAGAGTGATGTGGGGTGCCCCCTCCCTCTCTTCCCTTTGCTTTCCTCTCACT
TGGGCCCTTTGTGAGATTTTTCTTTGGCCTCCTGTAGAATGGAGCCAGACCATCCTGGATAATGTGAGAA
CATGCCTAGATTTACCCACAAAACACAAGTCTGAGAATTAATCATAAACGGAAGTTTAAATGAGGATTTG
GACCTTGGTAATTGTCCCTGAGTCCTATATATTTCAACAGTGGCTCTATGGGCTCTGATCGAATATCAGT
GATGAAAATAATAATAATAATAATAATAACGAATAAGCCAGAATCTTGCCATGAAGCCA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ACAGACAAGTGTGCATTGACCC; Reverse Primer - name:unspecified, sequence:TGGCTTCATGGCAAGATTCTGGC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_017924 same experiment
 EMAGE:21628 same embryo
 EMAGE:21629 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS